Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
LMX1AQ8TE12 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LMX1AQ8TE12 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
LMX1AQ8TE12 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
LMX1AQ8TE12 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
LMX1AQ8TE12 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
LMX1AQ8TE12 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC23.14■■□□□ 1.29
LMX1AQ8TE12 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 FOXO3B-201ENST00000395675 1928 ntBASIC23.13■■□□□ 1.29
LMX1AQ8TE12 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.13■■□□□ 1.29
LMX1AQ8TE12 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.12■■□□□ 1.29
LMX1AQ8TE12 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LMX1AQ8TE12 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
LMX1AQ8TE12 AC019069.1-201ENST00000610008 1333 ntBASIC23.1■■□□□ 1.29
LMX1AQ8TE12 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.1■■□□□ 1.29
LMX1AQ8TE12 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.1■■□□□ 1.29
LMX1AQ8TE12 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 ERN1-208ENST00000606895 2068 ntBASIC23.09■■□□□ 1.29
LMX1AQ8TE12 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 AC010997.5-201ENST00000609182 354 ntBASIC23.09■■□□□ 1.29
LMX1AQ8TE12 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
LMX1AQ8TE12 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 PEMT-206ENST00000435340 960 ntTSL 5 BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 MTDHP2-201ENST00000601468 714 ntBASIC23.08■■□□□ 1.29
LMX1AQ8TE12 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
LMX1AQ8TE12 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 LSM7-203ENST00000585409 512 ntTSL 2 BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
LMX1AQ8TE12 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
LMX1AQ8TE12 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
LMX1AQ8TE12 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
LMX1AQ8TE12 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
LMX1AQ8TE12 AC096887.2-201ENST00000623443 1957 ntBASIC23.05■■□□□ 1.28
LMX1AQ8TE12 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
LMX1AQ8TE12 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC23.04■■□□□ 1.28
LMX1AQ8TE12 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.04■■□□□ 1.28
LMX1AQ8TE12 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.04■■□□□ 1.28
LMX1AQ8TE12 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 AC097639.1-201ENST00000565519 1891 ntBASIC23.03■■□□□ 1.28
LMX1AQ8TE12 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
LMX1AQ8TE12 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.02■■□□□ 1.28
LMX1AQ8TE12 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
LMX1AQ8TE12 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC23.02■■□□□ 1.28
LMX1AQ8TE12 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC23.02■■□□□ 1.28
LMX1AQ8TE12 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
LMX1AQ8TE12 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
LMX1AQ8TE12 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms