Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 WHAMMP3-201ENST00000611636 1609 ntBASIC22.68■■□□□ 1.22
COL28A1Q2UY09 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 MIR6724-1-201ENST00000616420 92 ntBASIC22.67■■□□□ 1.22
COL28A1Q2UY09 MIR6724-2-201ENST00000616483 92 ntBASIC22.67■■□□□ 1.22
COL28A1Q2UY09 MIR6724-4-201ENST00000617390 92 ntBASIC22.67■■□□□ 1.22
COL28A1Q2UY09 MIR6724-3-201ENST00000622482 92 ntBASIC22.67■■□□□ 1.22
COL28A1Q2UY09 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL28A1Q2UY09 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 AC106739.1-201ENST00000617035 715 ntBASIC22.66■■□□□ 1.22
COL28A1Q2UY09 ANKRD20A6P-201ENST00000618763 204 ntBASIC22.66■■□□□ 1.22
COL28A1Q2UY09 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
COL28A1Q2UY09 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL28A1Q2UY09 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL28A1Q2UY09 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
COL28A1Q2UY09 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.65■■□□□ 1.22
COL28A1Q2UY09 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
COL28A1Q2UY09 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.22
COL28A1Q2UY09 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL28A1Q2UY09 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL28A1Q2UY09 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL28A1Q2UY09 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL28A1Q2UY09 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL28A1Q2UY09 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.64■■□□□ 1.21
COL28A1Q2UY09 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL28A1Q2UY09 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
COL28A1Q2UY09 AL449106.1-201ENST00000608517 1980 ntBASIC22.63■■□□□ 1.21
COL28A1Q2UY09 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
COL28A1Q2UY09 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC22.62■■□□□ 1.21
COL28A1Q2UY09 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 AC120024.1-201ENST00000562672 995 ntBASIC22.61■■□□□ 1.21
COL28A1Q2UY09 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.61■■□□□ 1.21
COL28A1Q2UY09 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
COL28A1Q2UY09 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
COL28A1Q2UY09 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC22.6■■□□□ 1.21
COL28A1Q2UY09 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.6■■□□□ 1.21
COL28A1Q2UY09 MTDHP2-201ENST00000601468 714 ntBASIC22.6■■□□□ 1.21
COL28A1Q2UY09 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
COL28A1Q2UY09 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 AL512631.2-201ENST00000604634 923 ntBASIC22.59■■□□□ 1.21
COL28A1Q2UY09 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
COL28A1Q2UY09 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 LSM4-201ENST00000252816 986 ntTSL 2 BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.21
COL28A1Q2UY09 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.2
COL28A1Q2UY09 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
COL28A1Q2UY09 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 AK3-203ENST00000447596 705 ntTSL 2 BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.57■■□□□ 1.2
COL28A1Q2UY09 AL121749.1-202ENST00000609313 2153 ntBASIC22.56■■□□□ 1.2
COL28A1Q2UY09 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL28A1Q2UY09 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 SUDS3P1-201ENST00000505831 966 ntBASIC22.55■■□□□ 1.2
COL28A1Q2UY09 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL28A1Q2UY09 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL28A1Q2UY09 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms