Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NKX3-2P78367 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.49■■□□□ 1.83
NKX3-2P78367 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX3-2P78367 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
NKX3-2P78367 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
NKX3-2P78367 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NKX3-2P78367 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX3-2P78367 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX3-2P78367 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC26.48■■□□□ 1.83
NKX3-2P78367 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC26.48■■□□□ 1.83
NKX3-2P78367 CLTA-210ENST00000540080 989 ntTSL 2 BASIC26.48■■□□□ 1.83
NKX3-2P78367 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NKX3-2P78367 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NKX3-2P78367 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.47■■□□□ 1.83
NKX3-2P78367 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NKX3-2P78367 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC26.47■■□□□ 1.83
NKX3-2P78367 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC26.47■■□□□ 1.83
NKX3-2P78367 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NKX3-2P78367 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NKX3-2P78367 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.46■■□□□ 1.83
NKX3-2P78367 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC26.46■■□□□ 1.83
NKX3-2P78367 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC26.46■■□□□ 1.83
NKX3-2P78367 AC005837.3-201ENST00000612163 286 ntBASIC26.46■■□□□ 1.83
NKX3-2P78367 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.46■■□□□ 1.83
NKX3-2P78367 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC26.46■■□□□ 1.83
NKX3-2P78367 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NKX3-2P78367 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NKX3-2P78367 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NKX3-2P78367 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NKX3-2P78367 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC26.45■■□□□ 1.82
NKX3-2P78367 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC26.45■■□□□ 1.82
NKX3-2P78367 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NKX3-2P78367 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.44■■□□□ 1.82
NKX3-2P78367 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
NKX3-2P78367 AC096631.2-201ENST00000436136 790 ntBASIC26.43■■□□□ 1.82
NKX3-2P78367 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC26.43■■□□□ 1.82
NKX3-2P78367 RASSF1-AS1-201ENST00000629828 790 ntBASIC26.43■■□□□ 1.82
NKX3-2P78367 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC26.43■■□□□ 1.82
NKX3-2P78367 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
NKX3-2P78367 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
NKX3-2P78367 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
NKX3-2P78367 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
NKX3-2P78367 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.42■■□□□ 1.82
NKX3-2P78367 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC26.42■■□□□ 1.82
NKX3-2P78367 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.41■■□□□ 1.82
NKX3-2P78367 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC26.41■■□□□ 1.82
NKX3-2P78367 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
NKX3-2P78367 CD72-202ENST00000378430 585 ntTSL 3 BASIC26.41■■□□□ 1.82
NKX3-2P78367 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC26.41■■□□□ 1.82
NKX3-2P78367 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
NKX3-2P78367 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
NKX3-2P78367 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
NKX3-2P78367 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
NKX3-2P78367 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
NKX3-2P78367 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
NKX3-2P78367 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.39■■□□□ 1.82
NKX3-2P78367 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
NKX3-2P78367 MIR6722-201ENST00000617286 78 ntBASIC26.39■■□□□ 1.82
NKX3-2P78367 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC26.39■■□□□ 1.82
NKX3-2P78367 FOXO3B-201ENST00000395675 1928 ntBASIC26.39■■□□□ 1.81
NKX3-2P78367 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
NKX3-2P78367 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.38■■□□□ 1.81
NKX3-2P78367 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC26.38■■□□□ 1.81
NKX3-2P78367 AC142086.6-201ENST00000621154 1765 ntBASIC26.38■■□□□ 1.81
NKX3-2P78367 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.37■■□□□ 1.81
NKX3-2P78367 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
NKX3-2P78367 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
NKX3-2P78367 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.36■■□□□ 1.81
NKX3-2P78367 CLTA-206ENST00000466396 695 ntTSL 2 BASIC26.36■■□□□ 1.81
NKX3-2P78367 SNX5-217ENST00000606557 1087 ntBASIC26.36■■□□□ 1.81
NKX3-2P78367 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC26.36■■□□□ 1.81
NKX3-2P78367 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
NKX3-2P78367 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
NKX3-2P78367 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NKX3-2P78367 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NKX3-2P78367 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX3-2P78367 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.34■■□□□ 1.81
NKX3-2P78367 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
NKX3-2P78367 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NKX3-2P78367 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NKX3-2P78367 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC26.33■■□□□ 1.81
NKX3-2P78367 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
NKX3-2P78367 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
NKX3-2P78367 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.32■■□□□ 1.8
NKX3-2P78367 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC26.32■■□□□ 1.8
NKX3-2P78367 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NKX3-2P78367 AC090877.2-201ENST00000558441 1738 ntBASIC26.31■■□□□ 1.8
NKX3-2P78367 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NKX3-2P78367 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms