Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 USP7-203ENST00000542333 1966 ntTSL 210.9□□□□□ -0.661e-9■■■■□ 22.9
YBX3P16989 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.62■□□□□ 0.091e-6■■■■□ 22.9
YBX3P16989 ADD2-203ENST00000403045 3745 ntTSL 210.27□□□□□ -0.772e-15■■■■□ 22.9
YBX3P16989 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC10.12□□□□□ -0.792e-15■■■■□ 22.9
YBX3P16989 ADD2-204ENST00000407644 3741 ntAPPRIS P4 TSL 1 (best) BASIC9.15□□□□□ -0.942e-15■■■■□ 22.9
YBX3P16989 HIVEP2-201ENST00000012134 9755 ntAPPRIS P1 TSL 5 BASIC9.95□□□□□ -0.825e-8■■■■□ 22.9
YBX3P16989 HIVEP2-203ENST00000367604 10032 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.885e-8■■■■□ 22.9
YBX3P16989 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.085e-8■■■■□ 22.9
YBX3P16989 KPNB1-205ENST00000577918 859 ntTSL 320.24■□□□□ 0.833e-7■■■■□ 22.9
YBX3P16989 KPNB1-214ENST00000583648 896 ntTSL 419.56■□□□□ 0.723e-7■■■■□ 22.9
YBX3P16989 TOM1-216ENST00000492723 2568 ntTSL 218.24■□□□□ 0.512e-7■■■■□ 22.9
YBX3P16989 NDUFA3-213ENST00000484103 541 ntTSL 1 (best)25.98■■□□□ 1.751e-10■■■■□ 22.9
YBX3P16989 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.79■■□□□ 1.081e-10■■■■□ 22.9
YBX3P16989 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.74■□□□□ 0.911e-10■■■■□ 22.9
YBX3P16989 NDUFA3-206ENST00000419113 654 ntTSL 320.21■□□□□ 0.831e-10■■■■□ 22.9
YBX3P16989 NDUFA3-205ENST00000417903 666 ntTSL 319.69■□□□□ 0.741e-10■■■■□ 22.9
YBX3P16989 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC19.07■□□□□ 0.641e-10■■■■□ 22.9
YBX3P16989 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.471e-10■■■■□ 22.9
YBX3P16989 NDUFA3-208ENST00000422029 694 ntTSL 315.56■□□□□ 0.081e-10■■■■□ 22.9
YBX3P16989 NDUFA3-209ENST00000451517 445 ntTSL 1 (best)13.11□□□□□ -0.311e-10■■■■□ 22.9
YBX3P16989 NDUFA3-207ENST00000420296 339 ntTSL 312.47□□□□□ -0.411e-10■■■■□ 22.9
YBX3P16989 NDUFA3-202ENST00000391762 435 ntTSL 5 BASIC12.24□□□□□ -0.451e-10■■■■□ 22.9
YBX3P16989 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.341e-6■■■■□ 22.9
YBX3P16989 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.291e-6■■■■□ 22.9
YBX3P16989 SLC44A1-201ENST00000374720 10511 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.541e-6■■■■□ 22.9
YBX3P16989 SLC44A1-205ENST00000470972 10433 ntTSL 1 (best)11.56□□□□□ -0.561e-6■■■■□ 22.9
YBX3P16989 PSPC1-204ENST00000492741 1709 ntTSL 226.48■■□□□ 1.832e-7■■■■□ 22.9
YBX3P16989 DERL1-203ENST00000419562 918 ntTSL 2 BASIC24.09■■□□□ 1.452e-7■■■■□ 22.9
YBX3P16989 PSPC1-203ENST00000471658 1647 ntTSL 1 (best)23.41■■□□□ 1.342e-7■■■■□ 22.9
YBX3P16989 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.962e-7■■■■□ 22.9
YBX3P16989 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.832e-7■■■■□ 22.9
YBX3P16989 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.252e-7■■■■□ 22.9
YBX3P16989 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.072e-7■■■■□ 22.9
YBX3P16989 DERL1-202ENST00000405944 1994 ntTSL 2 BASIC14.23□□□□□ -0.132e-7■■■■□ 22.9
YBX3P16989 ATG9A-203ENST00000409033 3701 ntTSL 1 (best)13.34□□□□□ -0.272e-7■■■■□ 22.9
YBX3P16989 DERL1-201ENST00000259512 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.542e-7■■■■□ 22.9
YBX3P16989 MAPK9-212ENST00000524170 538 ntTSL 511.02□□□□□ -0.652e-7■■■■□ 22.9
YBX3P16989 DERL1-206ENST00000524119 5513 ntTSL 410.88□□□□□ -0.672e-7■■■■□ 22.9
YBX3P16989 ATG9A-202ENST00000396761 3799 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.72e-7■■■■□ 22.9
YBX3P16989 PHIP-201ENST00000275034 10460 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.062e-7■■■■□ 22.9
YBX3P16989 PHIP-202ENST00000479165 5694 ntTSL 1 (best)2.38□□□□□ -2.032e-7■■■■□ 22.9
YBX3P16989 WAPL-203ENST00000372075 1799 ntTSL 28.25□□□□□ -1.091e-6■■■■□ 22.9
YBX3P16989 PYGL-207ENST00000553872 746 ntTSL 510.3□□□□□ -0.766e-7■■■■□ 22.9
YBX3P16989 STIM1-212ENST00000531332 561 ntTSL 218.68■□□□□ 0.589e-7■■■■□ 22.9
YBX3P16989 STIM1-205ENST00000526156 1024 ntTSL 216.18■□□□□ 0.189e-7■■■■□ 22.9
YBX3P16989 STIM1-206ENST00000526596 1214 ntTSL 514.19□□□□□ -0.149e-7■■■■□ 22.9
YBX3P16989 STIM1-218ENST00000533977 2080 ntTSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■■■□ 22.9
YBX3P16989 STIM1-209ENST00000527651 2184 ntTSL 1 (best) BASIC13.11□□□□□ -0.319e-7■■■■□ 22.9
YBX3P16989 VPS51-212ENST00000533656 923 ntTSL 227.85■■■□□ 2.051e-6■■■■□ 22.9
YBX3P16989 MTIF2-210ENST00000420637 517 ntTSL 416.03■□□□□ 0.162e-6■■■■□ 22.9
YBX3P16989 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.433e-7■■■■□ 22.9
YBX3P16989 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.31□□□□□ -0.283e-6■■■■□ 22.9
YBX3P16989 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC27.78■■■□□ 2.042e-7■■■■□ 22.9
YBX3P16989 SLC35E1-206ENST00000488894 1905 ntTSL 223.41■■□□□ 1.342e-7■■■■□ 22.9
YBX3P16989 LINGO1-202ENST00000557798 1035 ntTSL 323.32■■□□□ 1.322e-7■■■■□ 22.9
YBX3P16989 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.535e-6■■■■□ 22.9
YBX3P16989 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.475e-6■■■■□ 22.9
YBX3P16989 C1orf109-211ENST00000494120 2570 ntTSL 1 (best)15.35■□□□□ 0.052e-7■■■■□ 22.9
YBX3P16989 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.032e-7■■■■□ 22.9
YBX3P16989 UQCC1-214ENST00000457259 1987 ntTSL 1 (best)14.44□□□□□ -0.12e-7■■■■□ 22.9
YBX3P16989 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC14.33□□□□□ -0.122e-7■■■■□ 22.9
YBX3P16989 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.192e-7■■■■□ 22.9
YBX3P16989 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.192e-7■■■■□ 22.9
YBX3P16989 UQCC1-215ENST00000472559 1921 ntTSL 1 (best)13.83□□□□□ -0.22e-7■■■■□ 22.9
YBX3P16989 UQCC1-201ENST00000349714 2188 ntTSL 5 BASIC13.69□□□□□ -0.222e-7■■■■□ 22.9
YBX3P16989 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.222e-7■■■■□ 22.9
YBX3P16989 UQCC1-206ENST00000374394 2329 ntTSL 213.55□□□□□ -0.242e-7■■■■□ 22.9
YBX3P16989 UQCC1-202ENST00000359226 2036 ntTSL 4 BASIC13.47□□□□□ -0.252e-7■■■■□ 22.9
YBX3P16989 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.32e-7■■■■□ 22.9
YBX3P16989 NLRP2-206ENST00000427260 3411 ntTSL 2 BASIC13.08□□□□□ -0.322e-7■■■■□ 22.9
YBX3P16989 NLRP2-209ENST00000537859 3507 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.362e-7■■■■□ 22.9
YBX3P16989 NLRP2-214ENST00000543010 3576 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.372e-7■■■■□ 22.9
YBX3P16989 NLRP2-208ENST00000448584 3573 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.392e-7■■■■□ 22.9
YBX3P16989 NLRP2-212ENST00000540597 3744 ntTSL 212.63□□□□□ -0.392e-7■■■■□ 22.9
YBX3P16989 TOR1AIP1-208ENST00000528443 3685 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.412e-7■■■■□ 22.9
YBX3P16989 NLRP2-203ENST00000381637 405 ntTSL 512.39□□□□□ -0.432e-7■■■■□ 22.9
YBX3P16989 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.462e-7■■■■□ 22.9
YBX3P16989 UQCC1-203ENST00000374380 2133 ntTSL 2 BASIC12.05□□□□□ -0.482e-7■■■■□ 22.9
YBX3P16989 NLRP2-215ENST00000543277 707 ntTSL 311.97□□□□□ -0.492e-7■■■■□ 22.9
YBX3P16989 PRKAR2A-205ENST00000438535 624 ntTSL 311.62□□□□□ -0.552e-7■■■■□ 22.9
YBX3P16989 UQCC1-205ENST00000374385 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.642e-7■■■■□ 22.9
YBX3P16989 EHMT1-205ENST00000462942 7842 ntTSL 210.49□□□□□ -0.735e-6■■■■□ 22.9
YBX3P16989 ATP11C-208ENST00000471746 897 ntTSL 510.44□□□□□ -0.742e-7■■■■□ 22.9
YBX3P16989 EHMT1-237ENST00000637261 4208 ntTSL 510.25□□□□□ -0.775e-6■■■■□ 22.9
YBX3P16989 C1orf109-213ENST00000609516 2622 nt9.28□□□□□ -0.922e-7■■■■□ 22.9
YBX3P16989 SMAP2-203ENST00000435168 666 ntTSL 57.45□□□□□ -1.222e-7■■■■□ 22.9
YBX3P16989 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.342e-7■■■■□ 22.9
YBX3P16989 ATP11C-207ENST00000460773 2750 ntTSL 53.06□□□□□ -1.922e-7■■■■□ 22.9
YBX3P16989 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.568e-8■■■■□ 22.8
YBX3P16989 PLD3-217ENST00000594908 804 ntTSL 321.66■■□□□ 1.065e-9■■■■□ 22.8
YBX3P16989 PLD3-220ENST00000599353 332 ntTSL 321.48■■□□□ 1.035e-9■■■■□ 22.8
YBX3P16989 PLD3-214ENST00000492243 710 ntTSL 217.92■□□□□ 0.465e-9■■■■□ 22.8
YBX3P16989 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.88■□□□□ 0.774e-8■■■■□ 22.8
YBX3P16989 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.624e-8■■■■□ 22.8
YBX3P16989 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.214e-8■■■■□ 22.8
YBX3P16989 MEAF6-206ENST00000475828 1408 ntTSL 216.31■□□□□ 0.24e-8■■■■□ 22.8
YBX3P16989 RPN1-203ENST00000479113 558 ntTSL 45.52□□□□□ -1.532e-10■■■■□ 22.8
YBX3P16989 SYNJ2-206ENST00000485863 810 ntTSL 325.95■■□□□ 1.741e-7■■■■□ 22.7
YBX3P16989 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.341e-7■■■■□ 22.7
YBX3P16989 SYNJ2-201ENST00000355585 7378 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.641e-7■■■■□ 22.7
Retrieved 100 of 29,075 protein–RNA pairs in 482.3 ms