Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 Z83836.1-201ENST00000624605 1642 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC11.47□□□□□ -0.57
CKS1BP61024 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 AL137013.1-201ENST00000432946 1228 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 AC007967.3-201ENST00000434308 558 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 HOMER2P1-201ENST00000455653 964 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 AC092597.1-201ENST00000487352 616 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC11.47□□□□□ -0.57
CKS1BP61024 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC11.47□□□□□ -0.57
CKS1BP61024 DUT-205ENST00000558813 769 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC11.47□□□□□ -0.57
CKS1BP61024 AC011558.1-201ENST00000623459 338 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
CKS1BP61024 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.47□□□□□ -0.57
CKS1BP61024 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC11.47□□□□□ -0.57
CKS1BP61024 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CKS1BP61024 AC078925.2-201ENST00000624013 1973 ntBASIC11.47□□□□□ -0.57
CKS1BP61024 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 STX3-203ENST00000529177 1571 ntTSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 GPR89P-201ENST00000407924 1495 ntBASIC11.46□□□□□ -0.57
CKS1BP61024 LGALS8-AS1-201ENST00000487567 1457 ntBASIC11.46□□□□□ -0.57
CKS1BP61024 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CKS1BP61024 AC092647.4-201ENST00000457211 535 ntBASIC11.46□□□□□ -0.57
CKS1BP61024 SNX5-210ENST00000481323 562 ntTSL 3 BASIC11.46□□□□□ -0.57
CKS1BP61024 AC122714.2-201ENST00000502787 707 ntBASIC11.46□□□□□ -0.57
CKS1BP61024 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC11.46□□□□□ -0.57
CKS1BP61024 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CKS1BP61024 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC11.46□□□□□ -0.57
CKS1BP61024 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC11.46□□□□□ -0.57
CKS1BP61024 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC11.46□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms