Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
PDGFBP01127 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PDGFBP01127 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.1■□□□□ 0.17
PDGFBP01127 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.1■□□□□ 0.17
PDGFBP01127 HOMER2P2-201ENST00000451621 847 ntBASIC16.1■□□□□ 0.17
PDGFBP01127 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.1■□□□□ 0.17
PDGFBP01127 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.1■□□□□ 0.17
PDGFBP01127 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC16.1■□□□□ 0.17
PDGFBP01127 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.1■□□□□ 0.17
PDGFBP01127 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.1■□□□□ 0.17
PDGFBP01127 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC16.1■□□□□ 0.17
PDGFBP01127 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PDGFBP01127 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
PDGFBP01127 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDGFBP01127 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.09■□□□□ 0.17
PDGFBP01127 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
PDGFBP01127 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PDGFBP01127 TOMM22P5-201ENST00000416399 439 ntBASIC16.09■□□□□ 0.17
PDGFBP01127 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.09■□□□□ 0.17
PDGFBP01127 AC022137.2-201ENST00000503482 481 ntBASIC16.09■□□□□ 0.17
PDGFBP01127 FTLP10-202ENST00000505798 471 ntBASIC16.09■□□□□ 0.17
PDGFBP01127 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.09■□□□□ 0.17
PDGFBP01127 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.09■□□□□ 0.17
PDGFBP01127 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.09■□□□□ 0.17
PDGFBP01127 AL139011.1-202ENST00000642063 584 ntBASIC16.09■□□□□ 0.17
PDGFBP01127 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDGFBP01127 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PDGFBP01127 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PDGFBP01127 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.09■□□□□ 0.17
PDGFBP01127 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PDGFBP01127 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PDGFBP01127 AL138688.1-201ENST00000624851 1594 ntBASIC16.09■□□□□ 0.17
PDGFBP01127 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.17
PDGFBP01127 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PDGFBP01127 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.08■□□□□ 0.17
PDGFBP01127 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.08■□□□□ 0.17
PDGFBP01127 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDGFBP01127 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PDGFBP01127 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
PDGFBP01127 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
PDGFBP01127 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PDGFBP01127 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PDGFBP01127 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.08■□□□□ 0.16
PDGFBP01127 RPL17P11-201ENST00000417593 544 ntBASIC16.08■□□□□ 0.16
PDGFBP01127 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.08■□□□□ 0.16
PDGFBP01127 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.08■□□□□ 0.16
PDGFBP01127 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PDGFBP01127 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.08■□□□□ 0.16
PDGFBP01127 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.08■□□□□ 0.16
PDGFBP01127 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms