Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC18.89■□□□□ 0.61
CCDC39Q9UFE4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 HCG4-201ENST00000418983 998 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 AC087641.1-201ENST00000557561 1021 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 KRT8P39-201ENST00000396270 1433 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SLC22A20-204ENST00000530038 1673 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 PPT1-215ENST00000641471 2368 ntBASIC18.88■□□□□ 0.61
CCDC39Q9UFE4 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC098831.1-202ENST00000438821 336 ntBASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 CYP2A7P1-201ENST00000595391 815 ntBASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC010654.1-201ENST00000615722 808 ntBASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 AC116407.3-201ENST00000623905 1129 ntBASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
CCDC39Q9UFE4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 SNX33P1-201ENST00000592116 1762 ntBASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 AC108751.1-201ENST00000490852 363 ntBASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CCDC39Q9UFE4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms