Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.63■□□□□ 0.73
VPS53Q5VIR6 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 PKD1P5-201ENST00000532415 10291 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AC007950.2-201ENST00000615045 2347 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AL139400.1-201ENST00000366220 510 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AC005237.2-201ENST00000434368 219 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AC105233.2-201ENST00000523697 349 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AF228730.5-201ENST00000530288 346 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SNHG9-202ENST00000564014 471 ntBASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS53Q5VIR6 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 IGHV3-62-201ENST00000520057 340 ntBASIC19.61■□□□□ 0.73
VPS53Q5VIR6 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS53Q5VIR6 AL589702.1-201ENST00000641229 1509 ntBASIC19.61■□□□□ 0.73
VPS53Q5VIR6 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC19.6■□□□□ 0.73
VPS53Q5VIR6 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms