Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.01■□□□□ 0.15
CXCL12P48061 TARDBPP1-201ENST00000442013 1203 ntBASIC16.01■□□□□ 0.15
CXCL12P48061 RPL13AP20-201ENST00000459725 609 ntBASIC16.01■□□□□ 0.15
CXCL12P48061 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 RN7SL560P-201ENST00000577943 264 ntBASIC16.01■□□□□ 0.15
CXCL12P48061 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.01■□□□□ 0.15
CXCL12P48061 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.01■□□□□ 0.15
CXCL12P48061 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.01■□□□□ 0.15
CXCL12P48061 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
CXCL12P48061 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.01■□□□□ 0.15
CXCL12P48061 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16■□□□□ 0.15
CXCL12P48061 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 TOMM22P5-201ENST00000416399 439 ntBASIC16■□□□□ 0.15
CXCL12P48061 EEF1DP4-201ENST00000446006 880 ntBASIC16■□□□□ 0.15
CXCL12P48061 AC012441.1-201ENST00000446669 685 ntBASIC16■□□□□ 0.15
CXCL12P48061 KRT8P13-201ENST00000463294 1010 ntBASIC16■□□□□ 0.15
CXCL12P48061 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 AC120045.2-201ENST00000567334 178 ntBASIC16■□□□□ 0.15
CXCL12P48061 AP001063.1-201ENST00000568332 529 ntBASIC16■□□□□ 0.15
CXCL12P48061 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 AC009542.2-202ENST00000619004 1067 ntBASIC16■□□□□ 0.15
CXCL12P48061 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 RHOXF1P1-202ENST00000635473 501 ntBASIC16■□□□□ 0.15
CXCL12P48061 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
CXCL12P48061 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16■□□□□ 0.15
CXCL12P48061 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CXCL12P48061 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16■□□□□ 0.15
CXCL12P48061 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CXCL12P48061 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
CXCL12P48061 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CXCL12P48061 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.99■□□□□ 0.15
CXCL12P48061 AC074338.1-201ENST00000416825 156 ntBASIC15.99■□□□□ 0.15
CXCL12P48061 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.99■□□□□ 0.15
CXCL12P48061 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CXCL12P48061 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms