Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CXCL1P09341 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CXCL1P09341 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC12.66□□□□□ -0.38
CXCL1P09341 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.66□□□□□ -0.38
CXCL1P09341 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC12.66□□□□□ -0.38
CXCL1P09341 ZNF444P1-201ENST00000559497 298 ntBASIC12.66□□□□□ -0.38
CXCL1P09341 USP31-203ENST00000567975 2142 ntTSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 STK25P1-201ENST00000585406 838 ntBASIC12.66□□□□□ -0.38
CXCL1P09341 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CXCL1P09341 AC140113.3-201ENST00000605663 199 ntBASIC12.66□□□□□ -0.38
CXCL1P09341 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
CXCL1P09341 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 AL356585.2-201ENST00000625078 2396 ntBASIC12.66□□□□□ -0.38
CXCL1P09341 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CXCL1P09341 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CXCL1P09341 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.66□□□□□ -0.38
CXCL1P09341 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CXCL1P09341 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 CR383656.2-201ENST00000548656 2254 ntBASIC12.65□□□□□ -0.38
CXCL1P09341 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 KRT18P22-201ENST00000402024 1347 ntBASIC12.65□□□□□ -0.38
CXCL1P09341 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.65□□□□□ -0.38
CXCL1P09341 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC12.65□□□□□ -0.38
CXCL1P09341 AC007967.3-201ENST00000434308 558 ntBASIC12.65□□□□□ -0.38
CXCL1P09341 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC12.65□□□□□ -0.38
CXCL1P09341 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 SPEG-225ENST00000617028 815 ntTSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC12.65□□□□□ -0.38
CXCL1P09341 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC12.65□□□□□ -0.38
CXCL1P09341 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CXCL1P09341 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.65□□□□□ -0.38
CXCL1P09341 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.39
CXCL1P09341 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CXCL1P09341 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.39
CXCL1P09341 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
CXCL1P09341 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC12.65□□□□□ -0.39
CXCL1P09341 AGAP7P-201ENST00000582299 2062 ntBASIC12.65□□□□□ -0.39
CXCL1P09341 AGAP14-201ENST00000624701 2060 ntBASIC12.65□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms