Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC073621.1-201ENST00000392730 636 ntBASIC16■□□□□ 0.15
VPS4BO75351 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16■□□□□ 0.15
VPS4BO75351 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16■□□□□ 0.15
VPS4BO75351 HLA-J-203ENST00000494367 1087 ntBASIC16■□□□□ 0.15
VPS4BO75351 SLC25A6P2-201ENST00000497974 877 ntBASIC16■□□□□ 0.15
VPS4BO75351 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16■□□□□ 0.15
VPS4BO75351 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 AL078644.1-201ENST00000609881 752 ntBASIC16■□□□□ 0.15
VPS4BO75351 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
VPS4BO75351 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
VPS4BO75351 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16■□□□□ 0.15
VPS4BO75351 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16■□□□□ 0.15
VPS4BO75351 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.99■□□□□ 0.15
VPS4BO75351 AC010491.1-201ENST00000563101 2797 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.99■□□□□ 0.15
VPS4BO75351 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 CD63-210ENST00000550776 870 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 SPCS2P1-201ENST00000561636 679 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 AC104640.1-201ENST00000562617 2109 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 GGTLC5P-201ENST00000617623 998 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 SUPT20HL2-201ENST00000486479 2409 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 CDC14C-201ENST00000428251 1719 ntBASIC15.99■□□□□ 0.15
VPS4BO75351 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.99■□□□□ 0.15
VPS4BO75351 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
VPS4BO75351 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.99■□□□□ 0.15
VPS4BO75351 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VPS4BO75351 AC068587.6-202ENST00000641839 5619 ntBASIC15.98■□□□□ 0.15
VPS4BO75351 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
VPS4BO75351 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS4BO75351 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 LINC02447-202ENST00000501888 2146 ntBASIC15.98■□□□□ 0.15
VPS4BO75351 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.98■□□□□ 0.15
VPS4BO75351 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VPS4BO75351 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.98■□□□□ 0.15
VPS4BO75351 AC107918.2-201ENST00000530817 355 ntBASIC15.98■□□□□ 0.15
VPS4BO75351 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS4BO75351 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.98■□□□□ 0.15
VPS4BO75351 AC092865.6-201ENST00000642101 219 ntBASIC15.98■□□□□ 0.15
VPS4BO75351 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.98■□□□□ 0.15
VPS4BO75351 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms