Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 RN7SL596P-201ENST00000582123 288 ntBASIC27.22■■□□□ 1.95
CUX2O14529 YRDCP1-201ENST00000621419 643 ntBASIC27.22■■□□□ 1.95
CUX2O14529 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX2O14529 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX2O14529 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC27.22■■□□□ 1.95
CUX2O14529 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC27.22■■□□□ 1.95
CUX2O14529 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
CUX2O14529 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX2O14529 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX2O14529 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC27.22■■□□□ 1.95
CUX2O14529 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX2O14529 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX2O14529 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC27.22■■□□□ 1.95
CUX2O14529 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
CUX2O14529 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 AL138709.1-201ENST00000614840 1693 ntBASIC27.21■■□□□ 1.95
CUX2O14529 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC27.21■■□□□ 1.95
CUX2O14529 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX2O14529 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX2O14529 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC27.21■■□□□ 1.95
CUX2O14529 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CUX2O14529 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC27.21■■□□□ 1.95
CUX2O14529 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC27.21■■□□□ 1.95
CUX2O14529 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
CUX2O14529 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX2O14529 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC27.21■■□□□ 1.95
CUX2O14529 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
CUX2O14529 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CUX2O14529 AC079178.1-201ENST00000420915 656 ntBASIC27.2■■□□□ 1.95
CUX2O14529 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC27.2■■□□□ 1.95
CUX2O14529 AC025181.2-201ENST00000606994 802 ntBASIC27.2■■□□□ 1.95
CUX2O14529 AC100757.4-201ENST00000626934 759 ntBASIC27.2■■□□□ 1.95
CUX2O14529 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC27.2■■□□□ 1.95
CUX2O14529 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC27.2■■□□□ 1.95
CUX2O14529 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC27.2■■□□□ 1.94
CUX2O14529 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC27.2■■□□□ 1.94
CUX2O14529 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC27.2■■□□□ 1.94
CUX2O14529 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
CUX2O14529 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CUX2O14529 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC27.2■■□□□ 1.94
CUX2O14529 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC27.2■■□□□ 1.94
CUX2O14529 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CUX2O14529 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
CUX2O14529 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
CUX2O14529 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 TOMM22P5-201ENST00000416399 439 ntBASIC27.19■■□□□ 1.94
CUX2O14529 AL157792.1-201ENST00000488281 530 ntBASIC27.19■■□□□ 1.94
CUX2O14529 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX2O14529 GMFG-209ENST00000600322 622 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 PCDHB17P-201ENST00000539533 2393 ntBASIC27.19■■□□□ 1.94
CUX2O14529 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX2O14529 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
CUX2O14529 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 CRCP-204ENST00000398684 492 ntTSL 2 BASIC27.19■■□□□ 1.94
CUX2O14529 AC074338.1-201ENST00000416825 156 ntBASIC27.19■■□□□ 1.94
CUX2O14529 CD8B2-202ENST00000417670 633 ntBASIC27.19■■□□□ 1.94
CUX2O14529 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC27.19■■□□□ 1.94
CUX2O14529 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC27.19■■□□□ 1.94
CUX2O14529 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC27.19■■□□□ 1.94
CUX2O14529 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
CUX2O14529 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms