Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.69□□□□□ -0.38
CXCL1P09341 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
CXCL1P09341 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 APP-205ENST00000358918 2366 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 MMP23A-201ENST00000234610 1017 ntBASIC12.68□□□□□ -0.38
CXCL1P09341 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC12.68□□□□□ -0.38
CXCL1P09341 AC103564.2-201ENST00000432853 1299 ntBASIC12.68□□□□□ -0.38
CXCL1P09341 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 AL138966.2-201ENST00000621997 464 ntBASIC12.68□□□□□ -0.38
CXCL1P09341 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC12.68□□□□□ -0.38
CXCL1P09341 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
CXCL1P09341 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 SBF1P1-201ENST00000444527 5631 ntBASIC12.68□□□□□ -0.38
CXCL1P09341 BEND3P1-201ENST00000421591 1944 ntBASIC12.68□□□□□ -0.38
CXCL1P09341 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
CXCL1P09341 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CXCL1P09341 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC12.68□□□□□ -0.38
CXCL1P09341 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 MIR662-201ENST00000384847 95 ntBASIC12.67□□□□□ -0.38
CXCL1P09341 STARP1-201ENST00000397973 869 ntBASIC12.67□□□□□ -0.38
CXCL1P09341 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
CXCL1P09341 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC12.67□□□□□ -0.38
CXCL1P09341 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
CXCL1P09341 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC12.67□□□□□ -0.38
CXCL1P09341 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC12.67□□□□□ -0.38
CXCL1P09341 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC12.67□□□□□ -0.38
CXCL1P09341 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.67□□□□□ -0.38
CXCL1P09341 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CXCL1P09341 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.67□□□□□ -0.38
CXCL1P09341 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CXCL1P09341 AC027601.5-201ENST00000624065 2482 ntBASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms