Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC15.91■□□□□ 0.14
CCDC28BQ9BUN5 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 AC026396.1-201ENST00000419388 421 ntBASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 SNX18-202ENST00000343017 3140 ntBASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 AC006486.2-201ENST00000624246 2199 ntBASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.9■□□□□ 0.14
CCDC28BQ9BUN5 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 U82695.1-201ENST00000635752 1889 ntBASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 PCED1CP-201ENST00000419887 785 ntBASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 TMPOP1-202ENST00000424642 1267 ntBASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CCDC28BQ9BUN5 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CCDC28BQ9BUN5 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms