Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 PAUPAR-201ENST00000630360 2965 ntBASIC16.04■□□□□ 0.16
VPS4BO75351 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
VPS4BO75351 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
VPS4BO75351 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VPS4BO75351 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS4BO75351 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS4BO75351 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 KRT18P2-201ENST00000447938 1258 ntBASIC16.04■□□□□ 0.16
VPS4BO75351 CEND1P1-201ENST00000451006 455 ntBASIC16.04■□□□□ 0.16
VPS4BO75351 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS4BO75351 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS4BO75351 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS4BO75351 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.04■□□□□ 0.16
VPS4BO75351 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 AC087641.1-201ENST00000557561 1021 ntBASIC16.04■□□□□ 0.16
VPS4BO75351 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.04■□□□□ 0.16
VPS4BO75351 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4BO75351 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VPS4BO75351 AC132872.4-202ENST00000622924 2756 ntBASIC16.04■□□□□ 0.16
VPS4BO75351 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS4BO75351 PTCHD3P3-201ENST00000403073 906 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 HCG4-201ENST00000418983 998 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 MKNK2P1-201ENST00000437526 628 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS4BO75351 AC005412.3-201ENST00000580309 715 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.03■□□□□ 0.16
VPS4BO75351 AL513190.1-201ENST00000621254 727 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 AL805961.1-202ENST00000641562 540 ntBASIC16.03■□□□□ 0.16
VPS4BO75351 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.03■□□□□ 0.16
VPS4BO75351 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
VPS4BO75351 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VPS4BO75351 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.03■□□□□ 0.16
VPS4BO75351 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS4BO75351 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.02■□□□□ 0.16
VPS4BO75351 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.02■□□□□ 0.16
VPS4BO75351 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VPS4BO75351 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
VPS4BO75351 REXO1L8P-201ENST00000604378 1897 ntBASIC16.02■□□□□ 0.16
VPS4BO75351 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.02■□□□□ 0.16
VPS4BO75351 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms