Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 AC009053.2-201ENST00000563701 2365 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
NPHP1O15259 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 AC112492.5-201ENST00000421897 457 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 RPS2P32-201ENST00000439199 892 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
NPHP1O15259 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP1O15259 SDHAP3-202ENST00000515467 728 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.49■□□□□ 0.87
NPHP1O15259 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
NPHP1O15259 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP1O15259 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.49■□□□□ 0.87
NPHP1O15259 AC004790.1-201ENST00000612686 536 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NPHP1O15259 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP1O15259 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP1O15259 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC20.49■□□□□ 0.87
NPHP1O15259 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC20.49■□□□□ 0.87
NPHP1O15259 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
NPHP1O15259 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NPHP1O15259 PCDHB17P-201ENST00000539533 2393 ntBASIC20.49■□□□□ 0.87
NPHP1O15259 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
NPHP1O15259 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
NPHP1O15259 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
NPHP1O15259 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP1O15259 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.48■□□□□ 0.87
NPHP1O15259 MEP1AP4-201ENST00000423244 1087 ntBASIC20.48■□□□□ 0.87
NPHP1O15259 AC114501.2-201ENST00000439631 535 ntBASIC20.48■□□□□ 0.87
NPHP1O15259 SRD5A3P1-201ENST00000603021 949 ntBASIC20.48■□□□□ 0.87
NPHP1O15259 MIR6069-201ENST00000620069 79 ntBASIC20.48■□□□□ 0.87
NPHP1O15259 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP1O15259 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
NPHP1O15259 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.48■□□□□ 0.87
NPHP1O15259 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
NPHP1O15259 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
NPHP1O15259 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NPHP1O15259 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NPHP1O15259 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NPHP1O15259 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
NPHP1O15259 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
NPHP1O15259 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 AC093724.1-201ENST00000448659 1027 ntBASIC20.47■□□□□ 0.87
NPHP1O15259 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 NEU3-203ENST00000529024 581 ntTSL 3 BASIC20.47■□□□□ 0.87
NPHP1O15259 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 NAA38-206ENST00000576384 424 ntTSL 2 BASIC20.47■□□□□ 0.87
NPHP1O15259 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 AC004461.2-201ENST00000629517 803 ntBASIC20.47■□□□□ 0.87
NPHP1O15259 AL109936.8-201ENST00000641772 604 ntBASIC20.47■□□□□ 0.87
NPHP1O15259 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
NPHP1O15259 PCDHA12-202ENST00000613593 2588 ntBASIC20.47■□□□□ 0.87
NPHP1O15259 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC20.47■□□□□ 0.87
NPHP1O15259 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
NPHP1O15259 KRT8P12-202ENST00000472924 1397 ntBASIC20.46■□□□□ 0.87
NPHP1O15259 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
NPHP1O15259 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NPHP1O15259 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.46■□□□□ 0.87
NPHP1O15259 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms