Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC22.26■■□□□ 1.15
MSH6P52701 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH6P52701 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH6P52701 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
MSH6P52701 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH6P52701 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH6P52701 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH6P52701 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
MSH6P52701 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
MSH6P52701 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH6P52701 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC22.25■■□□□ 1.15
MSH6P52701 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH6P52701 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC22.25■■□□□ 1.15
MSH6P52701 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
MSH6P52701 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
MSH6P52701 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH6P52701 REEP1-202ENST00000453231 940 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC22.25■■□□□ 1.15
MSH6P52701 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH6P52701 HIST2H2BC-201ENST00000498492 580 ntBASIC22.25■■□□□ 1.15
MSH6P52701 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH6P52701 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH6P52701 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH6P52701 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
MSH6P52701 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC22.24■■□□□ 1.15
MSH6P52701 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
MSH6P52701 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
MSH6P52701 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH6P52701 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC22.24■■□□□ 1.15
MSH6P52701 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
MSH6P52701 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH6P52701 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
MSH6P52701 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
MSH6P52701 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC22.24■■□□□ 1.15
MSH6P52701 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC22.24■■□□□ 1.15
MSH6P52701 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC22.24■■□□□ 1.15
MSH6P52701 RPS2P36-201ENST00000456516 831 ntBASIC22.24■■□□□ 1.15
MSH6P52701 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC22.24■■□□□ 1.15
MSH6P52701 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC22.24■■□□□ 1.15
MSH6P52701 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH6P52701 AC128714.1-201ENST00000637035 887 ntBASIC22.24■■□□□ 1.15
MSH6P52701 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH6P52701 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC22.24■■□□□ 1.15
MSH6P52701 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH6P52701 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH6P52701 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH6P52701 PCDHB18P-201ENST00000524813 2368 ntBASIC22.23■■□□□ 1.15
MSH6P52701 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms