Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC14.44□□□□□ -0.1
SOX2P48431 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SOX2P48431 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
SOX2P48431 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC14.44□□□□□ -0.1
SOX2P48431 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
SOX2P48431 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
SOX2P48431 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.43□□□□□ -0.1
SOX2P48431 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX2P48431 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX2P48431 SLC25A6P2-201ENST00000497974 877 ntBASIC14.43□□□□□ -0.1
SOX2P48431 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX2P48431 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX2P48431 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.43□□□□□ -0.1
SOX2P48431 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.43□□□□□ -0.1
SOX2P48431 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 AC010654.1-201ENST00000615722 808 ntBASIC14.43□□□□□ -0.1
SOX2P48431 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SOX2P48431 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.43□□□□□ -0.1
SOX2P48431 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SOX2P48431 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
SOX2P48431 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 FOSL1P1-201ENST00000511041 816 ntBASIC14.42□□□□□ -0.1
SOX2P48431 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX2P48431 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.42□□□□□ -0.1
SOX2P48431 AF228730.7-201ENST00000641842 219 ntBASIC14.42□□□□□ -0.1
SOX2P48431 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SOX2P48431 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.42□□□□□ -0.1
SOX2P48431 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC14.42□□□□□ -0.1
SOX2P48431 AC013268.4-201ENST00000637413 2228 ntBASIC14.42□□□□□ -0.1
SOX2P48431 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms