Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC12.65□□□□□ -0.38
HOXD3P31249 FLJ38576-201ENST00000623820 2459 ntBASIC12.65□□□□□ -0.38
HOXD3P31249 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
HOXD3P31249 PCDHA12-202ENST00000613593 2588 ntBASIC12.65□□□□□ -0.39
HOXD3P31249 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
HOXD3P31249 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 METTL26-204ENST00000397665 558 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXD3P31249 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXD3P31249 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXD3P31249 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXD3P31249 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC12.64□□□□□ -0.39
HOXD3P31249 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 NKG7-205ENST00000600427 520 ntTSL 3 BASIC12.64□□□□□ -0.39
HOXD3P31249 AC008761.3-201ENST00000624803 892 ntBASIC12.64□□□□□ -0.39
HOXD3P31249 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC12.64□□□□□ -0.39
HOXD3P31249 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
HOXD3P31249 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
HOXD3P31249 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
HOXD3P31249 CA12-203ENST00000422263 2556 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 AC092171.3-201ENST00000610122 2651 ntBASIC12.63□□□□□ -0.39
HOXD3P31249 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 COPE-202ENST00000349893 948 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.63□□□□□ -0.39
HOXD3P31249 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 AC097493.3-201ENST00000509725 367 ntBASIC12.63□□□□□ -0.39
HOXD3P31249 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.63□□□□□ -0.39
HOXD3P31249 PUDP-206ENST00000540122 825 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.63□□□□□ -0.39
HOXD3P31249 MIR4453-201ENST00000584019 89 ntBASIC12.63□□□□□ -0.39
HOXD3P31249 AC073389.1-201ENST00000595595 795 ntBASIC12.63□□□□□ -0.39
HOXD3P31249 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.63□□□□□ -0.39
HOXD3P31249 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
HOXD3P31249 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms