Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 CSPG4P11-201ENST00000560634 4910 ntBASIC10.16□□□□□ -0.78
LINC00643Q86TS7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
LINC00643Q86TS7 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 UGT3A1-201ENST00000274278 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 DCST2-202ENST00000368424 2392 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 OS9-206ENST00000435406 2346 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 MIR4767-201ENST00000582827 78 ntBASIC10.15□□□□□ -0.78
LINC00643Q86TS7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AL354811.1-201ENST00000610286 706 ntBASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
LINC00643Q86TS7 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC10.15□□□□□ -0.79
LINC00643Q86TS7 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
LINC00643Q86TS7 TSPY13P-201ENST00000338964 914 ntBASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms