Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC097065.1-201ENST00000425737 517 ntBASIC12.43□□□□□ -0.42
COL6A5A8TX70 FAM197Y7-201ENST00000432892 766 ntBASIC12.43□□□□□ -0.42
COL6A5A8TX70 TARDBPP1-201ENST00000442013 1203 ntBASIC12.43□□□□□ -0.42
COL6A5A8TX70 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AL512430.1-201ENST00000392575 860 ntBASIC12.43□□□□□ -0.42
COL6A5A8TX70 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC12.43□□□□□ -0.42
COL6A5A8TX70 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL6A5A8TX70 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AC106794.1-201ENST00000506935 792 ntBASIC12.42□□□□□ -0.42
COL6A5A8TX70 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AC006453.4-201ENST00000636949 1252 ntBASIC12.42□□□□□ -0.42
COL6A5A8TX70 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 AL023775.1-201ENST00000454907 1746 ntBASIC12.42□□□□□ -0.42
COL6A5A8TX70 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 CMC1-204ENST00000423894 549 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL6A5A8TX70 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
COL6A5A8TX70 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AC079178.1-201ENST00000420915 656 ntBASIC12.41□□□□□ -0.42
COL6A5A8TX70 AC007274.2-201ENST00000421675 662 ntBASIC12.41□□□□□ -0.42
COL6A5A8TX70 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
COL6A5A8TX70 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms