Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.62■□□□□ 0.41
LRCH3Q96II8 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 AC098859.1-201ENST00000502915 1238 ntBASIC17.62■□□□□ 0.41
LRCH3Q96II8 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.62■□□□□ 0.41
LRCH3Q96II8 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 AL139327.4-201ENST00000612362 153 ntBASIC17.62■□□□□ 0.41
LRCH3Q96II8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 BCL2-203ENST00000589955 5011 ntBASIC17.62■□□□□ 0.41
LRCH3Q96II8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LRCH3Q96II8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LRCH3Q96II8 AC009053.2-201ENST00000563701 2365 ntBASIC17.61■□□□□ 0.41
LRCH3Q96II8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 RARRES2P5-201ENST00000564013 466 ntBASIC17.61■□□□□ 0.41
LRCH3Q96II8 AC092337.1-201ENST00000568699 1129 ntBASIC17.61■□□□□ 0.41
LRCH3Q96II8 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 TOP3BP1-201ENST00000420768 1380 ntBASIC17.61■□□□□ 0.41
LRCH3Q96II8 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.61■□□□□ 0.41
LRCH3Q96II8 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LRCH3Q96II8 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 PP12613-201ENST00000424958 2230 ntBASIC17.6■□□□□ 0.41
LRCH3Q96II8 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 AL162726.2-201ENST00000438986 1017 ntBASIC17.6■□□□□ 0.41
LRCH3Q96II8 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 MIR4492-201ENST00000581627 80 ntBASIC17.6■□□□□ 0.41
LRCH3Q96II8 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.6■□□□□ 0.41
LRCH3Q96II8 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LRCH3Q96II8 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 AC012317.2-201ENST00000623305 2251 ntBASIC17.59■□□□□ 0.41
LRCH3Q96II8 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms