Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 TCAF2P1-201ENST00000291129 2421 ntBASIC14.54□□□□□ -0.08
SKA3Q8IX90 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 TSPY26P-202ENST00000565928 3884 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC026691.1-201ENST00000602502 2017 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC002056.1-201ENST00000395613 760 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC112191.1-201ENST00000523689 701 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC020765.3-201ENST00000613051 740 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SKA3Q8IX90 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 ME2P1-201ENST00000426028 1970 ntBASIC14.53□□□□□ -0.08
SKA3Q8IX90 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SKA3Q8IX90 PCGF3-213ENST00000620529 1899 ntBASIC14.52□□□□□ -0.08
SKA3Q8IX90 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
SKA3Q8IX90 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.52□□□□□ -0.08
SKA3Q8IX90 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.52□□□□□ -0.08
SKA3Q8IX90 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SKA3Q8IX90 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 MTDHP5-201ENST00000598980 586 ntBASIC14.52□□□□□ -0.09
SKA3Q8IX90 AC091812.2-201ENST00000619081 385 ntBASIC14.52□□□□□ -0.09
SKA3Q8IX90 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SKA3Q8IX90 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.52□□□□□ -0.09
SKA3Q8IX90 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms