Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC144BQ3MJ40 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC144BQ3MJ40 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 MIR661-201ENST00000384842 89 ntBASIC19■□□□□ 0.63
CCDC144BQ3MJ40 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 GATD1-206ENST00000526325 756 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 AL031055.1-201ENST00000606362 631 ntBASIC19■□□□□ 0.63
CCDC144BQ3MJ40 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 TOP3BP1-201ENST00000420768 1380 ntBASIC19■□□□□ 0.63
CCDC144BQ3MJ40 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 MYB-241ENST00000616088 3573 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC144BQ3MJ40 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 AL365203.3-201ENST00000609742 2057 ntBASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 EGFEM1P-202ENST00000431685 1563 ntBASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 AC015922.1-201ENST00000421102 1152 ntBASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 AL390754.1-201ENST00000619088 582 ntBASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 AC008267.7-201ENST00000624570 1194 ntBASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.99■□□□□ 0.63
CCDC144BQ3MJ40 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 IGHV3-42-201ENST00000520410 361 ntBASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 ALG1L8P-201ENST00000533887 760 ntBASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 POLD4-211ENST00000539074 714 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC144BQ3MJ40 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms