Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 R3HDM2P2-201ENST00000401880 2116 ntBASIC19.17■□□□□ 0.66
MRE11P49959 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MRE11P49959 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.17■□□□□ 0.66
MRE11P49959 FAM8A3P-201ENST00000427218 844 ntBASIC19.17■□□□□ 0.66
MRE11P49959 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 AC138894.3-201ENST00000603787 634 ntBASIC19.17■□□□□ 0.66
MRE11P49959 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
MRE11P49959 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MRE11P49959 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.17■□□□□ 0.66
MRE11P49959 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
MRE11P49959 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC19.17■□□□□ 0.66
MRE11P49959 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
MRE11P49959 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
MRE11P49959 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC19.17■□□□□ 0.66
MRE11P49959 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
MRE11P49959 GRK6P1-201ENST00000400595 1711 ntBASIC19.17■□□□□ 0.66
MRE11P49959 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
MRE11P49959 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MRE11P49959 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
MRE11P49959 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC19.16■□□□□ 0.66
MRE11P49959 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC19.16■□□□□ 0.66
MRE11P49959 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MRE11P49959 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
MRE11P49959 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
MRE11P49959 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 MIR3917-201ENST00000580971 93 ntBASIC19.16■□□□□ 0.66
MRE11P49959 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.16■□□□□ 0.66
MRE11P49959 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.16■□□□□ 0.66
MRE11P49959 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
MRE11P49959 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
MRE11P49959 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.16■□□□□ 0.66
MRE11P49959 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
MRE11P49959 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
MRE11P49959 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC19.16■□□□□ 0.66
MRE11P49959 BANP-203ENST00000393207 2438 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
MRE11P49959 AC016027.1-202ENST00000607927 1699 ntBASIC19.15■□□□□ 0.66
MRE11P49959 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC19.15■□□□□ 0.66
MRE11P49959 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
MRE11P49959 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.15■□□□□ 0.66
MRE11P49959 AC019129.2-201ENST00000609837 1235 ntBASIC19.15■□□□□ 0.66
MRE11P49959 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.15■□□□□ 0.66
MRE11P49959 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
MRE11P49959 KRT89P-201ENST00000620027 1478 ntBASIC19.15■□□□□ 0.66
MRE11P49959 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC19.15■□□□□ 0.66
MRE11P49959 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MRE11P49959 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
MRE11P49959 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
MRE11P49959 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.14■□□□□ 0.65
MRE11P49959 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.14■□□□□ 0.65
MRE11P49959 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC19.14■□□□□ 0.65
MRE11P49959 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
MRE11P49959 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms