Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC15.79■□□□□ 0.12
SLC28A1O00337 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SLC28A1O00337 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
SLC28A1O00337 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.79■□□□□ 0.12
SLC28A1O00337 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.79■□□□□ 0.12
SLC28A1O00337 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
SLC28A1O00337 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SLC28A1O00337 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.79■□□□□ 0.12
SLC28A1O00337 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 AC004870.1-201ENST00000315132 882 ntBASIC15.78■□□□□ 0.12
SLC28A1O00337 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 VN2R19P-201ENST00000442399 1052 ntBASIC15.78■□□□□ 0.12
SLC28A1O00337 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.78■□□□□ 0.12
SLC28A1O00337 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 AL773604.1-201ENST00000617417 272 ntBASIC15.78■□□□□ 0.12
SLC28A1O00337 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.78■□□□□ 0.12
SLC28A1O00337 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.78■□□□□ 0.12
SLC28A1O00337 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
SLC28A1O00337 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC15.78■□□□□ 0.12
SLC28A1O00337 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SLC28A1O00337 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.77■□□□□ 0.12
SLC28A1O00337 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
SLC28A1O00337 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SLC28A1O00337 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.77■□□□□ 0.12
SLC28A1O00337 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SLC28A1O00337 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.77■□□□□ 0.12
SLC28A1O00337 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.77■□□□□ 0.12
SLC28A1O00337 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms