Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 AC022532.1-201ENST00000624563 1728 ntBASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
TRAV5A0A0B4J249 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 AL136379.1-201ENST00000623471 2642 ntBASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 LCK-206ENST00000373564 2137 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 LINC02228-204ENST00000642115 2962 ntBASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 IER3-202ENST00000376377 1350 ntBASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
TRAV5A0A0B4J249 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 PI4KAP1-204ENST00000612579 1703 ntBASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
TRAV5A0A0B4J249 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 PTCHD3P3-201ENST00000403073 906 ntBASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 PNN-202ENST00000553331 656 ntTSL 3 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 AC012615.1-201ENST00000565797 1299 ntBASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC12.77□□□□□ -0.37
TRAV5A0A0B4J249 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms