Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FAM86EP-206ENST00000510506 987 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC116407.4-201ENST00000623319 1061 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AP001350.2-201ENST00000625104 1094 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC066615.1-201ENST00000640911 628 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC005089.1-201ENST00000619486 2241 ntBASIC16■□□□□ 0.15
CCDC28BQ9BUN5 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16■□□□□ 0.15
CCDC28BQ9BUN5 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 AL591684.3-201ENST00000605187 298 ntBASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 AC063926.3-201ENST00000624734 5658 ntBASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC15.99■□□□□ 0.15
CCDC28BQ9BUN5 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AC092919.2-201ENST00000623631 1645 ntBASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.98■□□□□ 0.15
CCDC28BQ9BUN5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms