Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
HPS3Q969F9 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 AC112191.1-201ENST00000523689 701 ntBASIC18.15■□□□□ 0.5
HPS3Q969F9 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 PMS2P7-201ENST00000506558 1336 ntBASIC18.15■□□□□ 0.5
HPS3Q969F9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HPS3Q969F9 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
HPS3Q969F9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HPS3Q969F9 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.15■□□□□ 0.5
HPS3Q969F9 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.15■□□□□ 0.5
HPS3Q969F9 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HPS3Q969F9 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
HPS3Q969F9 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HPS3Q969F9 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
HPS3Q969F9 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HPS3Q969F9 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.14■□□□□ 0.49
HPS3Q969F9 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 AL355306.1-201ENST00000415580 579 ntBASIC18.14■□□□□ 0.49
HPS3Q969F9 MCCD1P2-201ENST00000423228 335 ntBASIC18.14■□□□□ 0.49
HPS3Q969F9 ADH5P3-201ENST00000433842 1137 ntBASIC18.14■□□□□ 0.49
HPS3Q969F9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 AC002347.1-201ENST00000569543 541 ntBASIC18.14■□□□□ 0.49
HPS3Q969F9 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.14■□□□□ 0.49
HPS3Q969F9 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.14■□□□□ 0.49
HPS3Q969F9 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HPS3Q969F9 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
HPS3Q969F9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.14■□□□□ 0.49
HPS3Q969F9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.13■□□□□ 0.49
HPS3Q969F9 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.13■□□□□ 0.49
HPS3Q969F9 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 AL671277.1-201ENST00000429656 993 ntBASIC18.13■□□□□ 0.49
HPS3Q969F9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.13■□□□□ 0.49
HPS3Q969F9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.13■□□□□ 0.49
HPS3Q969F9 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HPS3Q969F9 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.13■□□□□ 0.49
HPS3Q969F9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
HPS3Q969F9 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.13■□□□□ 0.49
HPS3Q969F9 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HPS3Q969F9 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC18.13■□□□□ 0.49
HPS3Q969F9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms