Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC20.35■□□□□ 0.85
CACNA1FO60840 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC20.35■□□□□ 0.85
CACNA1FO60840 STOM-203ENST00000538954 1257 ntTSL 5 BASIC20.35■□□□□ 0.85
CACNA1FO60840 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC20.35■□□□□ 0.85
CACNA1FO60840 AL132655.2-201ENST00000596276 594 ntBASIC20.35■□□□□ 0.85
CACNA1FO60840 LINC02560-201ENST00000596379 459 ntBASIC20.35■□□□□ 0.85
CACNA1FO60840 YTHDF3-AS1-201ENST00000603538 718 ntBASIC20.35■□□□□ 0.85
CACNA1FO60840 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1FO60840 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1FO60840 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CACNA1FO60840 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CACNA1FO60840 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.34■□□□□ 0.85
CACNA1FO60840 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 SPDYE18-201ENST00000510091 1050 ntBASIC20.34■□□□□ 0.85
CACNA1FO60840 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.34■□□□□ 0.85
CACNA1FO60840 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 LINC02447-202ENST00000501888 2146 ntBASIC20.34■□□□□ 0.85
CACNA1FO60840 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 BANP-204ENST00000393208 2283 ntTSL 2 BASIC20.34■□□□□ 0.85
CACNA1FO60840 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC20.34■□□□□ 0.85
CACNA1FO60840 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.34■□□□□ 0.85
CACNA1FO60840 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CACNA1FO60840 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
CACNA1FO60840 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CACNA1FO60840 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC20.33■□□□□ 0.85
CACNA1FO60840 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC20.33■□□□□ 0.85
CACNA1FO60840 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC20.33■□□□□ 0.85
CACNA1FO60840 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CACNA1FO60840 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
CACNA1FO60840 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CACNA1FO60840 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 AL391825.1-201ENST00000457671 1364 ntBASIC20.33■□□□□ 0.84
CACNA1FO60840 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.84
CACNA1FO60840 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC20.33■□□□□ 0.84
CACNA1FO60840 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
CACNA1FO60840 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CACNA1FO60840 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.84
CACNA1FO60840 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CACNA1FO60840 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 BASP1P1-201ENST00000430708 665 ntBASIC20.32■□□□□ 0.84
CACNA1FO60840 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC20.32■□□□□ 0.84
CACNA1FO60840 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC20.32■□□□□ 0.84
CACNA1FO60840 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.32■□□□□ 0.84
CACNA1FO60840 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
CACNA1FO60840 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 REXO1L1P-202ENST00000608646 1974 ntBASIC20.32■□□□□ 0.84
CACNA1FO60840 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CACNA1FO60840 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.32■□□□□ 0.84
CACNA1FO60840 AC009407.1-201ENST00000568958 598 ntBASIC20.32■□□□□ 0.84
CACNA1FO60840 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.32■□□□□ 0.84
CACNA1FO60840 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.32■□□□□ 0.84
CACNA1FO60840 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1FO60840 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC20.31■□□□□ 0.84
CACNA1FO60840 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms