Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AL592424.1-201ENST00000563624 1536 ntBASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AC022532.1-201ENST00000624563 1728 ntBASIC16.48■□□□□ 0.23
TRIM49D1C9J1S8 AP002414.2-201ENST00000591780 3365 ntBASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 RPS15P9-201ENST00000494093 319 ntBASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 AC006557.2-201ENST00000592985 1240 ntBASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRIM49D1C9J1S8 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 AC129492.6-201ENST00000611383 1305 ntBASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 LAGE3P1-201ENST00000425356 484 ntBASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 SCARNA2-201ENST00000458748 420 ntBASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 KRT18P31-201ENST00000506277 1292 ntBASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 AC021087.4-201ENST00000563761 564 ntBASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.46■□□□□ 0.23
TRIM49D1C9J1S8 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
TRIM49D1C9J1S8 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.46■□□□□ 0.22
TRIM49D1C9J1S8 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM49D1C9J1S8 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM49D1C9J1S8 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
TRIM49D1C9J1S8 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 AC063926.3-201ENST00000624734 5658 ntBASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM49D1C9J1S8 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms