Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 NABP1-203ENST00000409510 843 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 AC246785.2-201ENST00000432512 513 ntBASIC11.67□□□□□ -0.54
RPL39P62891 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC11.67□□□□□ -0.54
RPL39P62891 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC11.67□□□□□ -0.54
RPL39P62891 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 VENTXP7-201ENST00000475503 772 ntBASIC11.67□□□□□ -0.54
RPL39P62891 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC11.67□□□□□ -0.54
RPL39P62891 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 TP73-AS1-210ENST00000637775 1455 ntBASIC11.67□□□□□ -0.54
RPL39P62891 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 PCGF3-213ENST00000620529 1899 ntBASIC11.67□□□□□ -0.54
RPL39P62891 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC11.67□□□□□ -0.54
RPL39P62891 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC11.67□□□□□ -0.54
RPL39P62891 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
RPL39P62891 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC11.66□□□□□ -0.54
RPL39P62891 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 PC-214ENST00000628663 1470 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC11.66□□□□□ -0.54
RPL39P62891 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC11.66□□□□□ -0.54
RPL39P62891 S100A2-206ENST00000497140 697 ntTSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 ABR-204ENST00000543210 1049 ntTSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC11.66□□□□□ -0.54
RPL39P62891 ABR-217ENST00000572441 563 ntTSL 4 BASIC11.66□□□□□ -0.54
RPL39P62891 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC11.66□□□□□ -0.54
RPL39P62891 TERC-201ENST00000602385 541 ntBASIC11.66□□□□□ -0.54
RPL39P62891 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 AC005363.2-201ENST00000618631 242 ntBASIC11.66□□□□□ -0.54
RPL39P62891 ABBA01031661.1-201ENST00000634362 1253 ntBASIC11.66□□□□□ -0.54
RPL39P62891 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
RPL39P62891 TPO-203ENST00000346956 2923 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC11.66□□□□□ -0.54
RPL39P62891 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
RPL39P62891 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC11.65□□□□□ -0.54
RPL39P62891 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC11.65□□□□□ -0.54
RPL39P62891 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC11.65□□□□□ -0.54
RPL39P62891 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC11.65□□□□□ -0.54
RPL39P62891 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC11.65□□□□□ -0.54
RPL39P62891 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
RPL39P62891 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
RPL39P62891 PCDHA3-202ENST00000532566 4594 ntBASIC11.65□□□□□ -0.54
RPL39P62891 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC11.65□□□□□ -0.54
RPL39P62891 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
RPL39P62891 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms