Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC17.11■□□□□ 0.33
CDH6P55285 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDH6P55285 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.11■□□□□ 0.33
CDH6P55285 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDH6P55285 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDH6P55285 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDH6P55285 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDH6P55285 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDH6P55285 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDH6P55285 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH6P55285 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 AL022342.1-201ENST00000400363 863 ntBASIC17.1■□□□□ 0.33
CDH6P55285 AC092474.2-201ENST00000424288 719 ntBASIC17.1■□□□□ 0.33
CDH6P55285 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.1■□□□□ 0.33
CDH6P55285 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.1■□□□□ 0.33
CDH6P55285 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
CDH6P55285 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
CDH6P55285 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.1■□□□□ 0.33
CDH6P55285 AC140113.2-201ENST00000604370 208 ntBASIC17.1■□□□□ 0.33
CDH6P55285 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 AC092919.2-201ENST00000623631 1645 ntBASIC17.1■□□□□ 0.33
CDH6P55285 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.1■□□□□ 0.33
CDH6P55285 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CDH6P55285 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH6P55285 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CDH6P55285 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 VMO1-203ENST00000416307 712 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 KRT18P3-201ENST00000451602 1288 ntBASIC17.09■□□□□ 0.33
CDH6P55285 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.09■□□□□ 0.33
CDH6P55285 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 AL513190.1-201ENST00000621254 727 ntBASIC17.09■□□□□ 0.33
CDH6P55285 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.09■□□□□ 0.33
CDH6P55285 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDH6P55285 AC008894.3-201ENST00000624324 3103 ntBASIC17.09■□□□□ 0.33
CDH6P55285 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.09■□□□□ 0.33
CDH6P55285 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CDH6P55285 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CDH6P55285 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CDH6P55285 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms