Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A3P12111 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A3P12111 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
COL6A3P12111 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A3P12111 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.73■□□□□ 0.27
COL6A3P12111 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A3P12111 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.73■□□□□ 0.27
COL6A3P12111 AL590640.2-201ENST00000457038 527 ntBASIC16.73■□□□□ 0.27
COL6A3P12111 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.73■□□□□ 0.27
COL6A3P12111 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A3P12111 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC16.72■□□□□ 0.27
COL6A3P12111 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A3P12111 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL6A3P12111 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL6A3P12111 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A3P12111 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A3P12111 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A3P12111 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.72■□□□□ 0.27
COL6A3P12111 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 PIN4P1-201ENST00000451079 396 ntBASIC16.72■□□□□ 0.27
COL6A3P12111 AC019193.1-201ENST00000506678 823 ntBASIC16.72■□□□□ 0.27
COL6A3P12111 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL6A3P12111 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A3P12111 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A3P12111 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL6A3P12111 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
COL6A3P12111 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A3P12111 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A3P12111 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 AC078991.1-201ENST00000437297 610 ntBASIC16.71■□□□□ 0.27
COL6A3P12111 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 AC009486.1-201ENST00000569860 813 ntBASIC16.71■□□□□ 0.27
COL6A3P12111 AC024267.1-201ENST00000582320 895 ntBASIC16.71■□□□□ 0.27
COL6A3P12111 MIR6842-201ENST00000612539 65 ntBASIC16.71■□□□□ 0.27
COL6A3P12111 PRSS30P-206ENST00000641773 873 ntBASIC16.71■□□□□ 0.27
COL6A3P12111 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
COL6A3P12111 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A3P12111 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A3P12111 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.71■□□□□ 0.26
COL6A3P12111 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.71■□□□□ 0.26
COL6A3P12111 NOC2LP1-201ENST00000450578 752 ntBASIC16.71■□□□□ 0.26
COL6A3P12111 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.71■□□□□ 0.26
COL6A3P12111 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.26
COL6A3P12111 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC16.71■□□□□ 0.26
COL6A3P12111 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.71■□□□□ 0.26
COL6A3P12111 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL6A3P12111 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
COL6A3P12111 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms