Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.33■□□□□ 0.37
RTN3O95197 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.33■□□□□ 0.37
RTN3O95197 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
RTN3O95197 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 SPDYE14P-201ENST00000442619 822 ntBASIC17.33■□□□□ 0.36
RTN3O95197 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.33■□□□□ 0.36
RTN3O95197 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RTN3O95197 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.33■□□□□ 0.36
RTN3O95197 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 DOC2GP-204ENST00000639052 2548 ntBASIC17.33■□□□□ 0.36
RTN3O95197 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 TCAF2P1-201ENST00000291129 2421 ntBASIC17.33■□□□□ 0.36
RTN3O95197 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 AL031731.1-201ENST00000642131 2094 ntBASIC17.33■□□□□ 0.36
RTN3O95197 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RTN3O95197 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RTN3O95197 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC17.33■□□□□ 0.36
RTN3O95197 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RTN3O95197 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RTN3O95197 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
RTN3O95197 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RTN3O95197 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.32■□□□□ 0.36
RTN3O95197 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.32■□□□□ 0.36
RTN3O95197 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
RTN3O95197 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.32■□□□□ 0.36
RTN3O95197 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RTN3O95197 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.32■□□□□ 0.36
RTN3O95197 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RTN3O95197 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RTN3O95197 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.31■□□□□ 0.36
RTN3O95197 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.31■□□□□ 0.36
RTN3O95197 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.31■□□□□ 0.36
RTN3O95197 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RTN3O95197 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.31■□□□□ 0.36
RTN3O95197 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RTN3O95197 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RTN3O95197 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms