Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TUBB8P7-204ENST00000567960 1332 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.29□□□□□ -0.28
HMGB3O15347 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 AL353692.3-201ENST00000407031 1396 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
HMGB3O15347 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 GNB5-201ENST00000261837 8906 ntAPPRIS P3 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 UBE2SP1-201ENST00000450587 669 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 FAM201B-201ENST00000458407 597 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 RASA4DP-201ENST00000460726 1199 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC13.28□□□□□ -0.28
HMGB3O15347 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 TNRC18P2-201ENST00000417666 2714 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 CYP2D8P-201ENST00000433633 1490 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 AC013268.4-201ENST00000637413 2228 ntBASIC13.28□□□□□ -0.28
HMGB3O15347 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC13.28□□□□□ -0.28
HMGB3O15347 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
HMGB3O15347 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HMGB3O15347 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.27□□□□□ -0.28
HMGB3O15347 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC13.27□□□□□ -0.28
HMGB3O15347 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.28
HMGB3O15347 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
HMGB3O15347 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms