Protein–RNA interactions for Protein: Q99805

TM9SF2, Transmembrane 9 superfamily member 2, humanhuman

Predictions only

Length 663 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF2Q99805 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.34■□□□□ 0.05
TM9SF2Q99805 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC15.34■□□□□ 0.05
TM9SF2Q99805 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
TM9SF2Q99805 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF2Q99805 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF2Q99805 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF2Q99805 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF2Q99805 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.33■□□□□ 0.05
TM9SF2Q99805 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
TM9SF2Q99805 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 AC023274.1-201ENST00000418278 595 ntBASIC15.33■□□□□ 0.04
TM9SF2Q99805 GPX1P2-201ENST00000429271 606 ntBASIC15.33■□□□□ 0.04
TM9SF2Q99805 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 AC010327.4-202ENST00000591484 748 ntBASIC15.33■□□□□ 0.04
TM9SF2Q99805 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.33■□□□□ 0.04
TM9SF2Q99805 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TM9SF2Q99805 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 RPSAP43-201ENST00000402237 625 ntBASIC15.32■□□□□ 0.04
TM9SF2Q99805 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 KRT18P2-201ENST00000447938 1258 ntBASIC15.32■□□□□ 0.04
TM9SF2Q99805 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 AC124947.2-201ENST00000547118 1133 ntBASIC15.32■□□□□ 0.04
TM9SF2Q99805 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 AC079781.4-201ENST00000641908 219 ntBASIC15.32■□□□□ 0.04
TM9SF2Q99805 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
TM9SF2Q99805 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 AC024909.3-201ENST00000611513 2257 ntBASIC15.32■□□□□ 0.04
TM9SF2Q99805 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TM9SF2Q99805 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms