Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.35■□□□□ 0.37
LHX1P48742 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LHX1P48742 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.35■□□□□ 0.37
LHX1P48742 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.35■□□□□ 0.37
LHX1P48742 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.35■□□□□ 0.37
LHX1P48742 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.35■□□□□ 0.37
LHX1P48742 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LHX1P48742 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LHX1P48742 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.35■□□□□ 0.37
LHX1P48742 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 TREML5P-201ENST00000421694 576 ntBASIC17.34■□□□□ 0.37
LHX1P48742 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.34■□□□□ 0.37
LHX1P48742 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.34■□□□□ 0.37
LHX1P48742 AL592424.1-201ENST00000563624 1536 ntBASIC17.34■□□□□ 0.37
LHX1P48742 AC105021.1-202ENST00000570572 669 ntBASIC17.34■□□□□ 0.37
LHX1P48742 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC17.34■□□□□ 0.37
LHX1P48742 MIR4321-201ENST00000592276 80 ntBASIC17.34■□□□□ 0.37
LHX1P48742 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 AC026979.3-201ENST00000607315 403 ntBASIC17.34■□□□□ 0.37
LHX1P48742 RN7SL828P-201ENST00000607615 303 ntBASIC17.34■□□□□ 0.37
LHX1P48742 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.34■□□□□ 0.37
LHX1P48742 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.34■□□□□ 0.37
LHX1P48742 FO538757.1-201ENST00000623083 1397 ntBASIC17.34■□□□□ 0.37
LHX1P48742 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 LTB4R2-202ENST00000528054 3092 ntBASIC17.34■□□□□ 0.37
LHX1P48742 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LHX1P48742 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LHX1P48742 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LHX1P48742 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LHX1P48742 ALOX12P2-203ENST00000570921 1945 ntBASIC17.33■□□□□ 0.37
LHX1P48742 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.33■□□□□ 0.37
LHX1P48742 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.33■□□□□ 0.37
LHX1P48742 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.33■□□□□ 0.37
LHX1P48742 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.33■□□□□ 0.37
LHX1P48742 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
LHX1P48742 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.33■□□□□ 0.37
LHX1P48742 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
LHX1P48742 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
LHX1P48742 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LHX1P48742 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LHX1P48742 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.33■□□□□ 0.36
LHX1P48742 AC097493.3-201ENST00000509725 367 ntBASIC17.33■□□□□ 0.36
LHX1P48742 RNA5SP421-201ENST00000516864 134 ntBASIC17.33■□□□□ 0.36
LHX1P48742 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.33■□□□□ 0.36
LHX1P48742 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.33■□□□□ 0.36
LHX1P48742 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LHX1P48742 AC011467.4-201ENST00000594891 528 ntBASIC17.33■□□□□ 0.36
LHX1P48742 AL390955.2-201ENST00000603032 514 ntBASIC17.33■□□□□ 0.36
LHX1P48742 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.33■□□□□ 0.36
LHX1P48742 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.33■□□□□ 0.36
LHX1P48742 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LHX1P48742 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
LHX1P48742 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC17.32■□□□□ 0.36
LHX1P48742 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.32■□□□□ 0.36
LHX1P48742 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.32■□□□□ 0.36
LHX1P48742 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LHX1P48742 BASP1P1-201ENST00000430708 665 ntBASIC17.32■□□□□ 0.36
LHX1P48742 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.32■□□□□ 0.36
LHX1P48742 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.32■□□□□ 0.36
LHX1P48742 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.32■□□□□ 0.36
LHX1P48742 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms