Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
CDX1P47902 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 NORAD-201ENST00000565493 5339 ntBASIC13.52□□□□□ -0.24
CDX1P47902 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.52□□□□□ -0.24
CDX1P47902 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CDX1P47902 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CDX1P47902 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC13.52□□□□□ -0.25
CDX1P47902 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC13.52□□□□□ -0.25
CDX1P47902 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.52□□□□□ -0.25
CDX1P47902 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 RPL13AP23-201ENST00000480739 586 ntBASIC13.52□□□□□ -0.25
CDX1P47902 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.52□□□□□ -0.25
CDX1P47902 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CDX1P47902 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.52□□□□□ -0.25
CDX1P47902 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.52□□□□□ -0.25
CDX1P47902 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.52□□□□□ -0.25
CDX1P47902 MIR1199-201ENST00000621445 119 ntBASIC13.52□□□□□ -0.25
CDX1P47902 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.52□□□□□ -0.25
CDX1P47902 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 ZNF259P1-201ENST00000407656 1365 ntBASIC13.52□□□□□ -0.25
CDX1P47902 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.52□□□□□ -0.25
CDX1P47902 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CDX1P47902 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CDX1P47902 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CDX1P47902 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CDX1P47902 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CDX1P47902 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.52□□□□□ -0.25
CDX1P47902 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 GID4-202ENST00000376345 1391 ntTSL 3 BASIC13.51□□□□□ -0.25
CDX1P47902 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
CDX1P47902 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 AP000347.1-202ENST00000435868 847 ntBASIC13.51□□□□□ -0.25
CDX1P47902 AC092910.1-201ENST00000482027 1129 ntBASIC13.51□□□□□ -0.25
CDX1P47902 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 IGHV3-22-201ENST00000520721 359 ntBASIC13.51□□□□□ -0.25
CDX1P47902 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 ETFA-208ENST00000559602 792 ntTSL 3 BASIC13.51□□□□□ -0.25
CDX1P47902 AC012640.2-201ENST00000561606 901 ntBASIC13.51□□□□□ -0.25
CDX1P47902 AC106730.1-201ENST00000566722 1090 ntBASIC13.51□□□□□ -0.25
CDX1P47902 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 AF228730.7-201ENST00000641842 219 ntBASIC13.51□□□□□ -0.25
CDX1P47902 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CDX1P47902 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.51□□□□□ -0.25
CDX1P47902 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.51□□□□□ -0.25
CDX1P47902 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms