Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL135999.2-201ENST00000622438 1686 ntBASIC13.31□□□□□ -0.28
HMGB3O15347 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.31□□□□□ -0.28
HMGB3O15347 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
HMGB3O15347 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 FN1-206ENST00000359671 8524 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
HMGB3O15347 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC13.3□□□□□ -0.28
HMGB3O15347 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC13.3□□□□□ -0.28
HMGB3O15347 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 AL512604.3-201ENST00000569583 964 ntBASIC13.3□□□□□ -0.28
HMGB3O15347 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.3□□□□□ -0.28
HMGB3O15347 GXYLT1P4-201ENST00000613576 1192 ntBASIC13.3□□□□□ -0.28
HMGB3O15347 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
HMGB3O15347 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
HMGB3O15347 AP003680.1-201ENST00000598970 3660 ntBASIC13.3□□□□□ -0.28
HMGB3O15347 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC13.3□□□□□ -0.28
HMGB3O15347 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.3□□□□□ -0.28
HMGB3O15347 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 AL603832.2-201ENST00000566195 2125 ntBASIC13.3□□□□□ -0.28
HMGB3O15347 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
HMGB3O15347 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
HMGB3O15347 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 MDFI-202ENST00000373050 809 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 AP000523.1-201ENST00000398242 1049 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 TSPY7P-201ENST00000431358 1114 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC13.29□□□□□ -0.28
HMGB3O15347 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 ECEL1P2-202ENST00000465689 757 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC13.29□□□□□ -0.28
HMGB3O15347 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.29□□□□□ -0.28
HMGB3O15347 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HMGB3O15347 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
HMGB3O15347 TUBB8P12-201ENST00000308911 1335 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 TUBB7P-202ENST00000428444 1305 ntBASIC13.29□□□□□ -0.28
HMGB3O15347 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms