Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 OR2I1P-209ENST00000641730 5365 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MMP23A-201ENST00000234610 1017 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 MIR718-201ENST00000390190 70 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC008550.1-201ENST00000511500 884 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 VENTXP5-201ENST00000523979 775 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC005336.2-201ENST00000593183 939 ntBASIC12.09□□□□□ -0.47
SMKR1H3BMG3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SMKR1H3BMG3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.47
SMKR1H3BMG3 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 LINC01568-207ENST00000641790 1380 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 AC136621.1-201ENST00000624017 2304 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 STARP1-201ENST00000397973 869 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 AC013467.2-201ENST00000605472 835 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 AC073592.5-201ENST00000624854 528 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 AL139011.1-202ENST00000642063 584 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 KCP-203ENST00000610776 5108 ntTSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 KRT17P2-201ENST00000300992 1314 ntBASIC12.08□□□□□ -0.48
SMKR1H3BMG3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
SMKR1H3BMG3 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
SMKR1H3BMG3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms