Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AP003680.1-201ENST00000598970 3660 ntBASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 NCF1C-201ENST00000438382 1427 ntBASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
TCRBV3S1A0A5B6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 AC092647.4-201ENST00000457211 535 ntBASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 AC096582.2-201ENST00000510860 516 ntBASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.4■□□□□ 0.06
TCRBV3S1A0A5B6 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 CICP23-201ENST00000605013 2741 ntBASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
TCRBV3S1A0A5B6 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms