Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.2■□□□□ 0.98
CLCF1Q9UBD9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 ERN1-208ENST00000606895 2068 ntBASIC21.19■□□□□ 0.98
CLCF1Q9UBD9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 THA1P-201ENST00000590384 1145 ntBASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLCF1Q9UBD9 AC096887.2-201ENST00000623443 1957 ntBASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC21.17■□□□□ 0.98
CLCF1Q9UBD9 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCF1Q9UBD9 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC21.16■□□□□ 0.98
CLCF1Q9UBD9 AC120024.1-201ENST00000562672 995 ntBASIC21.16■□□□□ 0.98
CLCF1Q9UBD9 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLCF1Q9UBD9 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 GUSBP5-201ENST00000418136 578 ntBASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 AC010501.1-201ENST00000606270 1962 ntBASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.15■□□□□ 0.98
CLCF1Q9UBD9 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CLCF1Q9UBD9 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CLCF1Q9UBD9 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLCF1Q9UBD9 Z92544.1-202ENST00000571933 1220 ntBASIC21.14■□□□□ 0.97
CLCF1Q9UBD9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.14■□□□□ 0.97
CLCF1Q9UBD9 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
CLCF1Q9UBD9 AC092803.2-201ENST00000564287 1899 ntBASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CLCF1Q9UBD9 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 AC239859.2-201ENST00000444165 318 ntBASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLCF1Q9UBD9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CLCF1Q9UBD9 AC097639.1-201ENST00000565519 1891 ntBASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 AC011551.1-201ENST00000614101 683 ntBASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 FOXO3B-201ENST00000395675 1928 ntBASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CLCF1Q9UBD9 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.97
CLCF1Q9UBD9 BX664725.1-201ENST00000438252 379 ntBASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms