Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIME1Q9H400 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIME1Q9H400 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIME1Q9H400 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIME1Q9H400 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIME1Q9H400 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.85■□□□□ 0.93
LIME1Q9H400 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.85■□□□□ 0.93
LIME1Q9H400 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC20.85■□□□□ 0.93
LIME1Q9H400 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIME1Q9H400 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LIME1Q9H400 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIME1Q9H400 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIME1Q9H400 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LIME1Q9H400 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.84■□□□□ 0.93
LIME1Q9H400 UNC93B8-201ENST00000511903 705 ntBASIC20.84■□□□□ 0.93
LIME1Q9H400 KRT125P-201ENST00000546827 989 ntBASIC20.84■□□□□ 0.93
LIME1Q9H400 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LIME1Q9H400 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIME1Q9H400 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LIME1Q9H400 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LIME1Q9H400 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.83■□□□□ 0.93
LIME1Q9H400 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
LIME1Q9H400 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC20.83■□□□□ 0.93
LIME1Q9H400 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
LIME1Q9H400 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.92
LIME1Q9H400 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIME1Q9H400 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIME1Q9H400 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIME1Q9H400 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIME1Q9H400 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LIME1Q9H400 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC20.82■□□□□ 0.92
LIME1Q9H400 AC145676.1-201ENST00000514988 2004 ntBASIC20.82■□□□□ 0.92
LIME1Q9H400 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIME1Q9H400 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LIME1Q9H400 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.82■□□□□ 0.92
LIME1Q9H400 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIME1Q9H400 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LIME1Q9H400 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIME1Q9H400 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LIME1Q9H400 AC020928.2-201ENST00000588717 2197 ntBASIC20.82■□□□□ 0.92
LIME1Q9H400 WHAMMP3-201ENST00000611636 1609 ntBASIC20.82■□□□□ 0.92
LIME1Q9H400 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC20.81■□□□□ 0.92
LIME1Q9H400 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIME1Q9H400 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIME1Q9H400 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.81■□□□□ 0.92
LIME1Q9H400 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LIME1Q9H400 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.81■□□□□ 0.92
LIME1Q9H400 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIME1Q9H400 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC20.81■□□□□ 0.92
LIME1Q9H400 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC20.81■□□□□ 0.92
LIME1Q9H400 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.81■□□□□ 0.92
LIME1Q9H400 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIME1Q9H400 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC20.81■□□□□ 0.92
LIME1Q9H400 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIME1Q9H400 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIME1Q9H400 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIME1Q9H400 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LIME1Q9H400 MIR638-201ENST00000385237 100 ntBASIC20.8■□□□□ 0.92
LIME1Q9H400 BX664725.1-201ENST00000438252 379 ntBASIC20.8■□□□□ 0.92
LIME1Q9H400 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 KRT16P3-201ENST00000439127 1283 ntBASIC20.79■□□□□ 0.92
LIME1Q9H400 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC20.79■□□□□ 0.92
LIME1Q9H400 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIME1Q9H400 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC20.79■□□□□ 0.92
LIME1Q9H400 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.78■□□□□ 0.92
LIME1Q9H400 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.78■□□□□ 0.92
LIME1Q9H400 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIME1Q9H400 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIME1Q9H400 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.77■□□□□ 0.92
LIME1Q9H400 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.77■□□□□ 0.92
LIME1Q9H400 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIME1Q9H400 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIME1Q9H400 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIME1Q9H400 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.76■□□□□ 0.91
LIME1Q9H400 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIME1Q9H400 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIME1Q9H400 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.76■□□□□ 0.91
LIME1Q9H400 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.76■□□□□ 0.91
LIME1Q9H400 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LIME1Q9H400 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LIME1Q9H400 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
LIME1Q9H400 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIME1Q9H400 TSPY9P-201ENST00000440215 945 ntBASIC20.75■□□□□ 0.91
LIME1Q9H400 TSPY11P-201ENST00000442607 1045 ntBASIC20.75■□□□□ 0.91
LIME1Q9H400 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms