Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 REST-210ENST00000638187 1334 ntTSL 5 BASIC23.73■■□□□ 1.39
CPNE1Q99829 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CPNE1Q99829 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CPNE1Q99829 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.72■■□□□ 1.39
CPNE1Q99829 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.72■■□□□ 1.39
CPNE1Q99829 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CPNE1Q99829 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC23.71■■□□□ 1.39
CPNE1Q99829 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CPNE1Q99829 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CPNE1Q99829 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC23.71■■□□□ 1.39
CPNE1Q99829 ECEL1P2-201ENST00000461596 1295 ntBASIC23.71■■□□□ 1.39
CPNE1Q99829 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CPNE1Q99829 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
CPNE1Q99829 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.7■■□□□ 1.39
CPNE1Q99829 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CPNE1Q99829 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
CPNE1Q99829 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CPNE1Q99829 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
CPNE1Q99829 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
CPNE1Q99829 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CPNE1Q99829 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPNE1Q99829 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC23.68■■□□□ 1.38
CPNE1Q99829 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.68■■□□□ 1.38
CPNE1Q99829 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPNE1Q99829 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPNE1Q99829 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPNE1Q99829 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CPNE1Q99829 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.68■■□□□ 1.38
CPNE1Q99829 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.67■■□□□ 1.38
CPNE1Q99829 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 RP9P-202ENST00000450133 1212 ntBASIC23.67■■□□□ 1.38
CPNE1Q99829 PVT1-219ENST00000523427 938 ntTSL 3 BASIC23.67■■□□□ 1.38
CPNE1Q99829 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.67■■□□□ 1.38
CPNE1Q99829 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC23.67■■□□□ 1.38
CPNE1Q99829 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
CPNE1Q99829 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
CPNE1Q99829 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CPNE1Q99829 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CPNE1Q99829 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CPNE1Q99829 AC022413.1-201ENST00000624602 984 ntBASIC23.66■■□□□ 1.38
CPNE1Q99829 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.66■■□□□ 1.38
CPNE1Q99829 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC23.66■■□□□ 1.38
CPNE1Q99829 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CPNE1Q99829 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.66■■□□□ 1.38
CPNE1Q99829 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CPNE1Q99829 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC23.65■■□□□ 1.38
CPNE1Q99829 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CPNE1Q99829 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC23.65■■□□□ 1.38
CPNE1Q99829 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CPNE1Q99829 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CPNE1Q99829 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CPNE1Q99829 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CPNE1Q99829 LINC00543-201ENST00000567234 1845 ntBASIC23.64■■□□□ 1.38
CPNE1Q99829 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CPNE1Q99829 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC23.64■■□□□ 1.37
CPNE1Q99829 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.37
CPNE1Q99829 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CPNE1Q99829 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC23.64■■□□□ 1.37
CPNE1Q99829 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.63■■□□□ 1.37
CPNE1Q99829 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
CPNE1Q99829 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CPNE1Q99829 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CPNE1Q99829 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CPNE1Q99829 AC093536.1-201ENST00000569153 554 ntBASIC23.62■■□□□ 1.37
CPNE1Q99829 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
CPNE1Q99829 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.62■■□□□ 1.37
CPNE1Q99829 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CPNE1Q99829 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CPNE1Q99829 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CPNE1Q99829 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC23.61■■□□□ 1.37
CPNE1Q99829 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC23.61■■□□□ 1.37
CPNE1Q99829 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CPNE1Q99829 AC141586.4-201ENST00000624558 1573 ntBASIC23.61■■□□□ 1.37
CPNE1Q99829 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CPNE1Q99829 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CPNE1Q99829 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.6■■□□□ 1.37
CPNE1Q99829 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms