Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.05■■■□□ 2.08
SHROOM1Q2M3G4 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.04■■■□□ 2.08
SHROOM1Q2M3G4 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 BX664725.1-201ENST00000438252 379 ntBASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC28.03■■■□□ 2.08
SHROOM1Q2M3G4 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 KRT125P-201ENST00000546827 989 ntBASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC28.02■■■□□ 2.08
SHROOM1Q2M3G4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 AC137630.3-201ENST00000607245 391 ntBASIC28.01■■■□□ 2.07
SHROOM1Q2M3G4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 MIR4281-201ENST00000580852 62 ntBASIC28■■■□□ 2.07
SHROOM1Q2M3G4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28■■■□□ 2.07
SHROOM1Q2M3G4 ERN1-208ENST00000606895 2068 ntBASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SHROOM1Q2M3G4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 TSPY9P-201ENST00000440215 945 ntBASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 TSPY11P-201ENST00000442607 1045 ntBASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 AC021242.3-201ENST00000607598 1377 ntBASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC27.98■■■□□ 2.07
SHROOM1Q2M3G4 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
SHROOM1Q2M3G4 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC27.96■■■□□ 2.07
SHROOM1Q2M3G4 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.07
SHROOM1Q2M3G4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC27.95■■■□□ 2.06
SHROOM1Q2M3G4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM1Q2M3G4 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM1Q2M3G4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SHROOM1Q2M3G4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
SHROOM1Q2M3G4 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM1Q2M3G4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC27.93■■■□□ 2.06
SHROOM1Q2M3G4 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC27.93■■■□□ 2.06
SHROOM1Q2M3G4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
SHROOM1Q2M3G4 AC096887.2-201ENST00000623443 1957 ntBASIC27.93■■■□□ 2.06
SHROOM1Q2M3G4 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM1Q2M3G4 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM1Q2M3G4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
SHROOM1Q2M3G4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.92■■■□□ 2.06
SHROOM1Q2M3G4 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.92■■■□□ 2.06
SHROOM1Q2M3G4 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC27.91■■■□□ 2.06
SHROOM1Q2M3G4 KRT16P3-201ENST00000439127 1283 ntBASIC27.91■■■□□ 2.06
SHROOM1Q2M3G4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC27.91■■■□□ 2.06
SHROOM1Q2M3G4 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM1Q2M3G4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM1Q2M3G4 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.9■■■□□ 2.06
SHROOM1Q2M3G4 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM1Q2M3G4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
SHROOM1Q2M3G4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC27.89■■■□□ 2.06
SHROOM1Q2M3G4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.05
SHROOM1Q2M3G4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM1Q2M3G4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC27.88■■■□□ 2.05
SHROOM1Q2M3G4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC27.88■■■□□ 2.05
SHROOM1Q2M3G4 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SHROOM1Q2M3G4 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms