Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CX3CL1P78423 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CX3CL1P78423 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.01■□□□□ 0.63
CX3CL1P78423 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CX3CL1P78423 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19■□□□□ 0.63
CX3CL1P78423 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19■□□□□ 0.63
CX3CL1P78423 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CX3CL1P78423 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CX3CL1P78423 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CX3CL1P78423 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CX3CL1P78423 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.99■□□□□ 0.63
CX3CL1P78423 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.99■□□□□ 0.63
CX3CL1P78423 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CX3CL1P78423 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CX3CL1P78423 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC18.99■□□□□ 0.63
CX3CL1P78423 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CX3CL1P78423 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CX3CL1P78423 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.98■□□□□ 0.63
CX3CL1P78423 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.98■□□□□ 0.63
CX3CL1P78423 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CX3CL1P78423 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CX3CL1P78423 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
CX3CL1P78423 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CX3CL1P78423 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CX3CL1P78423 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CX3CL1P78423 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.97■□□□□ 0.63
CX3CL1P78423 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CX3CL1P78423 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.97■□□□□ 0.63
CX3CL1P78423 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CX3CL1P78423 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CL1P78423 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC18.96■□□□□ 0.63
CX3CL1P78423 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CL1P78423 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CL1P78423 NTF6A-201ENST00000591175 560 ntBASIC18.96■□□□□ 0.63
CX3CL1P78423 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CX3CL1P78423 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CX3CL1P78423 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC18.96■□□□□ 0.63
CX3CL1P78423 AC097639.1-201ENST00000565519 1891 ntBASIC18.95■□□□□ 0.62
CX3CL1P78423 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CX3CL1P78423 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CL1P78423 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CX3CL1P78423 AC018755.3-202ENST00000596210 929 ntBASIC18.95■□□□□ 0.62
CX3CL1P78423 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.95■□□□□ 0.62
CX3CL1P78423 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CX3CL1P78423 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
CX3CL1P78423 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
CX3CL1P78423 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CL1P78423 KRT18P60-201ENST00000312876 1297 ntBASIC18.94■□□□□ 0.62
CX3CL1P78423 KRT18P10-201ENST00000388836 1287 ntBASIC18.94■□□□□ 0.62
CX3CL1P78423 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CX3CL1P78423 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CL1P78423 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CL1P78423 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CX3CL1P78423 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC18.93■□□□□ 0.62
CX3CL1P78423 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CX3CL1P78423 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC18.93■□□□□ 0.62
CX3CL1P78423 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC18.92■□□□□ 0.62
CX3CL1P78423 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CL1P78423 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CL1P78423 SPCS2P3-201ENST00000500401 656 ntBASIC18.92■□□□□ 0.62
CX3CL1P78423 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CX3CL1P78423 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 DUX4L9-201ENST00000449051 1259 ntBASIC18.91■□□□□ 0.62
CX3CL1P78423 AC129492.7-201ENST00000622992 756 ntBASIC18.91■□□□□ 0.62
CX3CL1P78423 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CX3CL1P78423 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CX3CL1P78423 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
CX3CL1P78423 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CX3CL1P78423 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms