Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 MIR6724-2-201ENST00000616483 92 ntBASIC31.25■■■□□ 2.59
PRIM1P49642 MIR6724-4-201ENST00000617390 92 ntBASIC31.25■■■□□ 2.59
PRIM1P49642 MIR6724-3-201ENST00000622482 92 ntBASIC31.25■■■□□ 2.59
PRIM1P49642 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PRIM1P49642 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC31.24■■■□□ 2.59
PRIM1P49642 AC096631.2-201ENST00000436136 790 ntBASIC31.24■■■□□ 2.59
PRIM1P49642 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC31.24■■■□□ 2.59
PRIM1P49642 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC31.24■■■□□ 2.59
PRIM1P49642 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
PRIM1P49642 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
PRIM1P49642 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
PRIM1P49642 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PRIM1P49642 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PRIM1P49642 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
PRIM1P49642 DRD5P2-201ENST00000421395 2012 ntBASIC31.22■■■□□ 2.59
PRIM1P49642 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC31.22■■■□□ 2.59
PRIM1P49642 SENP5-202ENST00000419026 973 ntTSL 3 BASIC31.22■■■□□ 2.59
PRIM1P49642 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.22■■■□□ 2.59
PRIM1P49642 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
PRIM1P49642 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.21■■■□□ 2.59
PRIM1P49642 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC31.21■■■□□ 2.59
PRIM1P49642 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PRIM1P49642 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC31.2■■■□□ 2.59
PRIM1P49642 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.59
PRIM1P49642 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC31.2■■■□□ 2.59
PRIM1P49642 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.2■■■□□ 2.58
PRIM1P49642 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC31.19■■■□□ 2.58
PRIM1P49642 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC31.19■■■□□ 2.58
PRIM1P49642 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC31.19■■■□□ 2.58
PRIM1P49642 MTDHP2-201ENST00000601468 714 ntBASIC31.19■■■□□ 2.58
PRIM1P49642 AL356740.2-201ENST00000601559 647 ntBASIC31.19■■■□□ 2.58
PRIM1P49642 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
PRIM1P49642 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PRIM1P49642 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC31.18■■■□□ 2.58
PRIM1P49642 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
PRIM1P49642 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRIM1P49642 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRIM1P49642 LINC01003-201ENST00000564834 1764 ntBASIC31.17■■■□□ 2.58
PRIM1P49642 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC31.17■■■□□ 2.58
PRIM1P49642 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
PRIM1P49642 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PRIM1P49642 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
PRIM1P49642 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC31.16■■■□□ 2.58
PRIM1P49642 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PRIM1P49642 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PRIM1P49642 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PRIM1P49642 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
PRIM1P49642 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PRIM1P49642 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC31.15■■■□□ 2.58
PRIM1P49642 QDPR-206ENST00000508623 601 ntTSL 3 BASIC31.15■■■□□ 2.58
PRIM1P49642 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
PRIM1P49642 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
PRIM1P49642 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
PRIM1P49642 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC31.14■■■□□ 2.58
PRIM1P49642 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC31.14■■■□□ 2.57
PRIM1P49642 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
PRIM1P49642 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
PRIM1P49642 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC31.13■■■□□ 2.57
PRIM1P49642 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.13■■■□□ 2.57
PRIM1P49642 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC31.12■■■□□ 2.57
PRIM1P49642 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
PRIM1P49642 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC31.12■■■□□ 2.57
PRIM1P49642 GAK-223ENST00000628912 497 ntTSL 5 BASIC31.12■■■□□ 2.57
PRIM1P49642 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PRIM1P49642 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
PRIM1P49642 AC142472.1-201ENST00000612013 1741 ntBASIC31.12■■■□□ 2.57
PRIM1P49642 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.12■■■□□ 2.57
PRIM1P49642 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC31.11■■■□□ 2.57
PRIM1P49642 TK2-202ENST00000417693 1046 ntTSL 2 BASIC31.11■■■□□ 2.57
PRIM1P49642 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
PRIM1P49642 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC31.11■■■□□ 2.57
PRIM1P49642 AL512631.2-201ENST00000604634 923 ntBASIC31.11■■■□□ 2.57
PRIM1P49642 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
PRIM1P49642 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PRIM1P49642 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
PRIM1P49642 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC31.09■■■□□ 2.57
PRIM1P49642 AC133561.4-201ENST00000566112 224 ntBASIC31.09■■■□□ 2.57
PRIM1P49642 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
PRIM1P49642 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC31.08■■■□□ 2.57
PRIM1P49642 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.08■■■□□ 2.57
PRIM1P49642 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC31.08■■■□□ 2.57
PRIM1P49642 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC31.08■■■□□ 2.57
PRIM1P49642 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PRIM1P49642 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
PRIM1P49642 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PRIM1P49642 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.07■■■□□ 2.56
PRIM1P49642 RASSF1-AS1-201ENST00000629828 790 ntBASIC31.07■■■□□ 2.56
PRIM1P49642 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.07■■■□□ 2.56
PRIM1P49642 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PRIM1P49642 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRIM1P49642 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRIM1P49642 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC31.06■■■□□ 2.56
PRIM1P49642 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRIM1P49642 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC31.06■■■□□ 2.56
PRIM1P49642 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.06■■■□□ 2.56
PRIM1P49642 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.06■■■□□ 2.56
PRIM1P49642 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC31.06■■■□□ 2.56
PRIM1P49642 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC31.06■■■□□ 2.56
PRIM1P49642 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
PRIM1P49642 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms