Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZNRF2P2-203ENST00000454624 420 ntBASIC20.77■□□□□ 0.92
SOX2P48431 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SOX2P48431 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SOX2P48431 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SOX2P48431 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.76■□□□□ 0.91
SOX2P48431 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
SOX2P48431 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SOX2P48431 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX2P48431 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.76■□□□□ 0.91
SOX2P48431 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SOX2P48431 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX2P48431 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SOX2P48431 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SOX2P48431 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.75■□□□□ 0.91
SOX2P48431 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX2P48431 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.75■□□□□ 0.91
SOX2P48431 AC126177.7-201ENST00000547904 679 ntBASIC20.75■□□□□ 0.91
SOX2P48431 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX2P48431 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX2P48431 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SOX2P48431 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SOX2P48431 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC20.75■□□□□ 0.91
SOX2P48431 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SOX2P48431 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.74■□□□□ 0.91
SOX2P48431 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.74■□□□□ 0.91
SOX2P48431 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
SOX2P48431 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SOX2P48431 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SOX2P48431 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
SOX2P48431 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SOX2P48431 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX2P48431 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX2P48431 MLEC-202ENST00000412616 841 ntTSL 3 BASIC20.73■□□□□ 0.91
SOX2P48431 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX2P48431 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.73■□□□□ 0.91
SOX2P48431 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.73■□□□□ 0.91
SOX2P48431 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SOX2P48431 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SOX2P48431 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
SOX2P48431 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.72■□□□□ 0.91
SOX2P48431 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 CASK-201ENST00000378154 2494 ntTSL 5 BASIC20.72■□□□□ 0.91
SOX2P48431 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SOX2P48431 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.71■□□□□ 0.91
SOX2P48431 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SOX2P48431 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX2P48431 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.7■□□□□ 0.9
SOX2P48431 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX2P48431 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SOX2P48431 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.7■□□□□ 0.9
SOX2P48431 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SOX2P48431 CR559946.2-201ENST00000623684 991 ntBASIC20.7■□□□□ 0.9
SOX2P48431 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SOX2P48431 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX2P48431 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SOX2P48431 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX2P48431 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX2P48431 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX2P48431 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SOX2P48431 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SOX2P48431 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.69■□□□□ 0.9
SOX2P48431 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SOX2P48431 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX2P48431 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX2P48431 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SOX2P48431 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SOX2P48431 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
SOX2P48431 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.67■□□□□ 0.9
SOX2P48431 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 AC133561.1-201ENST00000568600 2415 ntBASIC20.67■□□□□ 0.9
SOX2P48431 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SOX2P48431 LINC00543-201ENST00000567234 1845 ntBASIC20.67■□□□□ 0.9
SOX2P48431 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX2P48431 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.66■□□□□ 0.9
SOX2P48431 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
SOX2P48431 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SOX2P48431 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 10.6 ms