Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SOX3P41225 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SOX3P41225 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.22■■□□□ 1.15
SOX3P41225 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SOX3P41225 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.22■■□□□ 1.15
SOX3P41225 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
SOX3P41225 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SOX3P41225 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SOX3P41225 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
SOX3P41225 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.21■■□□□ 1.15
SOX3P41225 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC22.21■■□□□ 1.15
SOX3P41225 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SOX3P41225 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.21■■□□□ 1.15
SOX3P41225 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SOX3P41225 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.2■■□□□ 1.15
SOX3P41225 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
SOX3P41225 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
SOX3P41225 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
SOX3P41225 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
SOX3P41225 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.2■■□□□ 1.14
SOX3P41225 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
SOX3P41225 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SOX3P41225 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.19■■□□□ 1.14
SOX3P41225 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
SOX3P41225 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
SOX3P41225 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
SOX3P41225 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SOX3P41225 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
SOX3P41225 AC010980.1-201ENST00000587192 1142 ntBASIC22.18■■□□□ 1.14
SOX3P41225 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
SOX3P41225 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
SOX3P41225 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SOX3P41225 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.17■■□□□ 1.14
SOX3P41225 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
SOX3P41225 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
SOX3P41225 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SOX3P41225 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SOX3P41225 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SOX3P41225 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC22.17■■□□□ 1.14
SOX3P41225 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SOX3P41225 CEBPA-AS1-201ENST00000592982 2198 ntBASIC22.16■■□□□ 1.14
SOX3P41225 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.16■■□□□ 1.14
SOX3P41225 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC22.16■■□□□ 1.14
SOX3P41225 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SOX3P41225 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SOX3P41225 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SOX3P41225 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SOX3P41225 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SOX3P41225 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SOX3P41225 AC074183.2-201ENST00000623112 922 ntBASIC22.15■■□□□ 1.14
SOX3P41225 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SOX3P41225 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SOX3P41225 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SOX3P41225 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
SOX3P41225 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 RPS2P7-201ENST00000447334 885 ntBASIC22.14■■□□□ 1.13
SOX3P41225 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.14■■□□□ 1.13
SOX3P41225 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
SOX3P41225 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.13■■□□□ 1.13
SOX3P41225 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.13■■□□□ 1.13
SOX3P41225 RARRES2P1-201ENST00000474487 481 ntBASIC22.13■■□□□ 1.13
SOX3P41225 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SOX3P41225 AC087393.1-201ENST00000582896 145 ntBASIC22.13■■□□□ 1.13
SOX3P41225 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
SOX3P41225 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
SOX3P41225 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.12■■□□□ 1.13
SOX3P41225 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
SOX3P41225 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.12■■□□□ 1.13
SOX3P41225 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC22.12■■□□□ 1.13
SOX3P41225 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
SOX3P41225 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
SOX3P41225 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
SOX3P41225 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SOX3P41225 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
SOX3P41225 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.11■■□□□ 1.13
SOX3P41225 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC22.11■■□□□ 1.13
SOX3P41225 PVT1_1.1-201ENST00000615125 194 ntBASIC22.11■■□□□ 1.13
SOX3P41225 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
SOX3P41225 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
SOX3P41225 KRT18P10-201ENST00000388836 1287 ntBASIC22.1■■□□□ 1.13
SOX3P41225 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
SOX3P41225 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.1■■□□□ 1.13
SOX3P41225 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.1■■□□□ 1.13
SOX3P41225 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
SOX3P41225 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SOX3P41225 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SOX3P41225 KRT8P33-201ENST00000508125 1423 ntBASIC22.09■■□□□ 1.13
SOX3P41225 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.09■■□□□ 1.13
SOX3P41225 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
SOX3P41225 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
SOX3P41225 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms